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    LOC105376081 uncharacterized LOC105376081 [ Homo sapiens (human) ]

    Gene ID: 105376081, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105376081
    Gene description
    uncharacterized LOC105376081
    See related
    Ensembl:ENSG00000293607
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in esophagus (RPKM 3.1), prostate (RPKM 0.7) and 2 other tissues See more
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    Genomic context

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    See LOC105376081 in Genome Data Viewer
    Location:
    9q21.13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (73090372..73113905, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (85241115..85264811, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family member A1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:75681098-75682297 Neighboring gene cytochrome P450 family 1 subfamily D member 1, pseudogene Neighboring gene MPRA-validated peak7266 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28464 Neighboring gene CRISPRi-validated cis-regulatory element chr9.871 Neighboring gene CRISPRi-validated cis-regulatory element chr9.872 Neighboring gene Sharpr-MPRA regulatory region 9166 Neighboring gene annexin A1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:75829932-75830605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28466 Neighboring gene uncharacterized LOC105376082

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      73090372..73113905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_929928.2 RNA Sequence

      Related
      ENST00000719129.1

    2. XR_929927.2 RNA Sequence

    3. XR_929926.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      85241115..85264811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080612.1 RNA Sequence

    2. XR_007080611.1 RNA Sequence

    3. XR_007080610.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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