SLIT2 slit guidance ligand 2 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SLIT2provided by HGNC
Official Full Name: slit guidance ligand 2provided by HGNC
Primary source: HGNC:HGNC:11086
See related: Ensembl:ENSG00000145147 MIM:603746; AllianceGenome:HGNC:11086
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: SLIL3; Slit-2
Summary: This gene encodes a member of the slit family of secreted glycoproteins, which are ligands for the Robo family of immunoglobulin receptors. Slit proteins play highly conserved roles in axon guidance and neuronal migration and may also have functions during other cell migration processes including leukocyte migration. Members of the slit family are characterized by an N-terminal signal peptide, four leucine-rich repeats, nine epidermal growth factor repeats, and a C-terminal cysteine knot. Proteolytic processing of this protein gives rise to an N-terminal fragment that contains the four leucine-rich repeats and five epidermal growth factor repeats and a C-terminal fragment that contains four epidermal growth factor repeats and the cysteine knot. Both full length and cleaved proteins are secreted extracellularly and can function in axon repulsion as well as other specific processes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
Expression: Broad expression in lung (RPKM 13.1), adrenal (RPKM 9.9) and 21 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 4p15.31

Exon count:: 40

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	4	NC_000004.12 (20251905..20620561)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	4	NC_060928.1 (20234597..20602238)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	4	NC_000004.11 (20253528..20622184)

Chromosome 4 - NC_000004.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Tissue-specific circular RNA induction during human fetal development
Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
BioProject: PRJNA270632
Publication: PMID 26076956
Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

circVAPA-rich small extracellular vesicles derived from gastric cancer promote neural invasion by inhibiting SLIT2 expression in neuronal cells.
Title: circVAPA-rich small extracellular vesicles derived from gastric cancer promote neural invasion by inhibiting SLIT2 expression in neuronal cells.
Recombinant Slit2 attenuates tracheal fibroblast activation in benign central airway obstruction by inhibiting the TGF-beta1/Smad3 signaling pathway.
Title: Recombinant Slit2 attenuates tracheal fibroblast activation in benign central airway obstruction by inhibiting the TGF-β1/Smad3 signaling pathway.
The chemorepellent, SLIT2, bolsters innate immunity against Staphylococcus aureus.
Title: The chemorepellent, SLIT2, bolsters innate immunity against Staphylococcus aureus.
Bone marrow mesenchymal stem cell-derived exosomal microRNA-382 promotes osteogenesis in osteoblast via regulation of SLIT2.
Title: Bone marrow mesenchymal stem cell-derived exosomal microRNA-382 promotes osteogenesis in osteoblast via regulation of SLIT2.
SLIT2 promoter hypermethylation predicts disease progression in chronic myeloid leukemia.
Title: SLIT2 promoter hypermethylation predicts disease progression in chronic myeloid leukemia.
RNA m6A reader IGF2BP3 promotes metastasis of triple-negative breast cancer via SLIT2 repression.
Title: RNA m6A reader IGF2BP3 promotes metastasis of triple-negative breast cancer via SLIT2 repression.
Slit guidance ligand 2 promotes the inflammatory response of periodontitis through activation of the NF-kappaB signaling pathway.
Title: Slit guidance ligand 2 promotes the inflammatory response of periodontitis through activation of the NF-κB signaling pathway.
The Role of Slit-2 in Gestational Diabetes Mellitus and Its Effect on Pregnancy Outcome.
Title: The Role of Slit-2 in Gestational Diabetes Mellitus and Its Effect on Pregnancy Outcome.
Genomic evolution and the impact of SLIT2 mutation in relapsed intrahepatic cholangiocarcinoma.
Title: Genomic evolution and the impact of SLIT2 mutation in relapsed intrahepatic cholangiocarcinoma.
Ductular reaction promotes intrahepatic angiogenesis through Slit2-Roundabout 1 signaling.
Title: Ductular reaction promotes intrahepatic angiogenesis through Slit2-Roundabout 1 signaling.

Submit: New GeneRIF Correction See all GeneRIFs (145)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

HIV-1 interactions

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Replication interactions

Interaction	Pubs
HIV-1 dendritic cell-to-T cell transmission is inhibited by the presence of recombinant, extracellular Slit2N	PubMed

Protein interactions

Protein	Gene	Interaction	Pubs
Envelope surface glycoprotein gp120	env	The N-terminal leucine-rich repeat fragment of Slit2 inhibits HIV-1 gp120-induced ROBO1-actin association	PubMed
	env	The N-terminal leucine-rich repeat fragment of Slit2 inhibits HIV-1 gp120-induced actin polymerization in T cells	PubMed
	env	The N-terminal leucine-rich repeat fragment of Slit2 inhibits HIV-1 gp120-induced phosphorylation of both LIMK1 and cofilin	PubMed
	env	SLIT2N, an active fragment of SLIT2, inhibits M-tropic HIV-1 gp120-induced Src signaling and activation of its downstream targets Pyk2, CDC42, Rac1, and paxillin in immature monocyte-derived dendritic cells	PubMed
	env	Inhibition of M-tropic HIV-1 gp120-induced transendothelial migration by SLIT2N involves SLIT2N-mediated enhancement of co-localization of Robo1 with WASp and LSP1 in immature monocyte-derived dendritic cells	PubMed
	env	SLIT2N, an active fragment of SLIT2, inhibits M-tropic HIV-1 gp120-induced association of LSP1, Wiskott-Aldrich Syndrome protein (WASp), Actin-Related Protein 2/3 (Arp2/3), and beta-actin in immature monocyte-derived dendritic cells	PubMed
	env	SLIT2N, an active fragment of SLIT2, inhibits M-tropic HIV-1 gp120-induces transendothelial migration and podosome formation in immature monocyte-derived dendritic cells	PubMed
	env	SLIT2 inhibits HIV-1-induced lymphatic hyperpermeability by blocking the interaction between Robo4 and integrin alpha5beta1 in human lymphatic endothelial cells	PubMed
	env	SLIT2 significantly inhibits HIV-1 gp120-induced phosphorylation of c-Src in human lymphatic endothelial cells	PubMed
	env	HIV-1 gp120 modulates the expression of SLIT2 in human lymphatic endothelial cells	PubMed
Vif	vif	HIV-1 Vif upregulates the expression of slit homolog 2 (SLIT2) in Vif-expression T cells	PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

D4S2742 (e-PCR)
- UniSTS:55577

G34229 (e-PCR)
- UniSTS:1309

SHGC-50557 (e-PCR)
- UniSTS:1319

D4S331 (e-PCR)
- UniSTS:88359

D4S2611 (e-PCR)
- UniSTS:73259

SHGC-50605 (e-PCR)
- UniSTS:304

D4S279 (e-PCR)
- UniSTS:47706

SHGC-149436 (e-PCR)
- UniSTS:177005

SLIT2 (e-PCR)
- UniSTS:479854

G34103 (e-PCR)
- UniSTS:77945

SHGC-67708 (e-PCR)
- UniSTS:4235

D4S1372 (e-PCR)
- UniSTS:46222

SHGC-51362 (e-PCR)
- UniSTS:80293

STS-R78732 (e-PCR)
- UniSTS:32465

D4S1063 (e-PCR)
- UniSTS:24278

RH102649 (e-PCR)
- UniSTS:96983

D4S3124 (e-PCR)
- UniSTS:5097

SHGC-50719 (e-PCR)
- UniSTS:5098

SHGC-24805 (e-PCR)
- UniSTS:58347

D4S544 (e-PCR)
- UniSTS:75245

SHGC-149242 (e-PCR)
- UniSTS:176882

Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables GTPase inhibitor activity	IDA Inferred from Direct Assay more info	PubMed
enables Roundabout binding	IBA Inferred from Biological aspect of Ancestor more info
enables Roundabout binding	IPI Inferred from Physical Interaction more info	PubMed
enables calcium ion binding	NAS Non-traceable Author Statement more info	PubMed
enables heparin binding	IBA Inferred from Biological aspect of Ancestor more info
enables heparin binding	IDA Inferred from Direct Assay more info	PubMed
enables identical protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables laminin-1 binding	IDA Inferred from Direct Assay more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein homodimerization activity	IDA Inferred from Direct Assay more info	PubMed
enables proteoglycan binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in Roundabout signaling pathway	IC Inferred by Curator more info	PubMed
involved_in Roundabout signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in aortic valve morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in apoptotic process involved in luteolysis	IEP Inferred from Expression Pattern more info	PubMed
involved_in axon extension involved in axon guidance	IDA Inferred from Direct Assay more info	PubMed
involved_in axon guidance	IDA Inferred from Direct Assay more info	PubMed
involved_in branching morphogenesis of an epithelial tube	IDA Inferred from Direct Assay more info	PubMed
involved_in branching morphogenesis of an epithelial tube	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in cell migration involved in sprouting angiogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in cellular response to heparin	IDA Inferred from Direct Assay more info	PubMed
involved_in cellular response to hormone stimulus	IEP Inferred from Expression Pattern more info	PubMed
NOT involved_in chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration	IDA Inferred from Direct Assay more info	PubMed
involved_in chemorepulsion involved in postnatal olfactory bulb interneuron migration	IDA Inferred from Direct Assay more info	PubMed
involved_in corticospinal neuron axon guidance through spinal cord	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in induction of negative chemotaxis	IDA Inferred from Direct Assay more info	PubMed
involved_in motor neuron axon guidance	IDA Inferred from Direct Assay more info	PubMed
involved_in negative chemotaxis	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative chemotaxis	IDA Inferred from Direct Assay more info	PubMed
involved_in negative chemotaxis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of actin filament polymerization	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of cell growth	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of cell growth	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of cell migration	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of cell migration	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of cellular response to growth factor stimulus	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of chemokine-mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in negative regulation of endothelial cell migration	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of lamellipodium assembly	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of leukocyte chemotaxis	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of monocyte chemotaxis	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of mononuclear cell migration	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of neutrophil chemotaxis	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of protein phosphorylation	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of retinal ganglion cell axon guidance	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of small GTPase mediated signal transduction	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of smooth muscle cell chemotaxis	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of smooth muscle cell migration	IDA Inferred from Direct Assay more info	PubMed
involved_in negative regulation of vascular permeability	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of apoptotic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of axonogenesis	TAS Traceable Author Statement more info	PubMed
involved_in pulmonary valve morphogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in response to cortisol	IEP Inferred from Expression Pattern more info	PubMed
involved_in retinal ganglion cell axon guidance	IBA Inferred from Biological aspect of Ancestor more info
involved_in retinal ganglion cell axon guidance	IDA Inferred from Direct Assay more info	PubMed
involved_in ureteric bud development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in ventricular septum morphogenesis	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cell surface	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in extracellular exosome	HDA more info	PubMed
located_in extracellular region	TAS Traceable Author Statement more info
located_in extracellular space	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	NAS Non-traceable Author Statement more info	PubMed

General protein information

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Preferred Names: slit homolog 2 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

NG_047105.1 RefSeqGene

Range

4981..373637

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001289135.3 → NP_001276064.1 slit homolog 2 protein isoform 2 precursor

Status: REVIEWED

Description

Transcript Variant: This variant (2) contains one alternate in-frame exon and lacks one alternate in-frame exon in the 5' coding region compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.

Source sequence(s)

AA489463, AC021118, AC096718, AF133270, AK126459, BC143978, BF112143, BI494498, BM474839, CV370469, DA721496, DB207352

Consensus CDS

CCDS75110.1

UniProtKB/TrEMBL

X6R3P0

Related

ENSP00000422261.1, ENST00000503837.5

Conserved Domains (8) summary

TIGR00864
Location:828 → 1009

PCC; polycystin cation channel protein

smart00013
Location:27 → 58

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:1179 → 1312

LamG; Laminin G domain

cd00054
Location:1072 → 1108

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00031
Location:847 → 859

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:38 → 56

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:553 → 850

internalin_A; class 1 internalin InlA

pfam13855
Location:774 → 833

LRR_8; Leucine rich repeat
NM_001289136.3 → NP_001276065.1 slit homolog 2 protein isoform 3 precursor

See identical proteins and their annotated locations for NP_001276065.1

Status: REVIEWED

Description

Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.

Source sequence(s)

AA489463, AC021118, AC096718, AK126459, BC143978, BF112143, BI494498, BM474839, CV370469, DA721496, DB207352

Consensus CDS

CCDS75111.1

UniProtKB/TrEMBL

X6R3P0

Related

ENSP00000427548.1, ENST00000503823.5

Conserved Domains (8) summary

TIGR00864
Location:824 → 1005

PCC; polycystin cation channel protein

smart00013
Location:27 → 58

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:1175 → 1308

LamG; Laminin G domain

cd00054
Location:1068 → 1104

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00031
Location:843 → 855

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:38 → 56

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:549 → 846

internalin_A; class 1 internalin InlA

pfam13855
Location:770 → 829

LRR_8; Leucine rich repeat
NM_004787.4 → NP_004778.1 slit homolog 2 protein isoform 1 precursor

See identical proteins and their annotated locations for NP_004778.1

Status: REVIEWED

Description

Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).

Source sequence(s)

AA489463, AC021118, AC096718, AK126459, BC117190, BF112143, BI494498, BM474839, CV370469, DA721496, DB207352

Consensus CDS

CCDS3426.1

UniProtKB/Swiss-Prot

A0A0A6YYB8, B7ZLR5, O94813, O95710, Q17RU3, Q9Y5Q7

UniProtKB/TrEMBL

X6R3P0

Related

ENSP00000422591.1, ENST00000504154.6

Conserved Domains (8) summary

TIGR00864
Location:832 → 1013

PCC; polycystin cation channel protein

smart00013
Location:27 → 58

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:1183 → 1316

LamG; Laminin G domain

cd00054
Location:1076 → 1112

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00031
Location:851 → 863

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:38 → 56

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:557 → 854

internalin_A; class 1 internalin InlA

pfam13855
Location:778 → 837

LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

NC_000004.12 Reference GRCh38.p14 Primary Assembly

Range

20251905..20620561

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005248211.3 → XP_005248268.1 slit homolog 2 protein isoform X1

UniProtKB/TrEMBL

X6R3P0

Related

ENSP00000273739.5, ENST00000273739.9

Conserved Domains (9) summary

TIGR00864
Location:836 → 1017

PCC; polycystin cation channel protein

smart00013
Location:27 → 58

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:1187 → 1320

LamG; Laminin G domain

cd00054
Location:1080 → 1116

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00031
Location:855 → 867

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:38 → 56

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:561 → 858

internalin_A; class 1 internalin InlA

pfam12661
Location:1134 → 1155

hEGF; Human growth factor-like EGF

pfam13855
Location:782 → 841

LRR_8; Leucine rich repeat
XM_006713986.3 → XP_006714049.1 slit homolog 2 protein isoform X2

UniProtKB/TrEMBL

X6R3P0

Conserved Domains (7) summary

TIGR00864
Location:812 → 993

PCC; polycystin cation channel protein

smart00013
Location:27 → 58

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:1163 → 1296

LamG; Laminin G domain

cd00054
Location:1056 → 1092

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00033
Location:38 → 56

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:73 → 434

internalin_A; class 1 internalin InlA

pfam13855
Location:55 → 115

LRR_8; Leucine rich repeat
XM_011513909.3 → XP_011512211.1 slit homolog 2 protein isoform X3

UniProtKB/TrEMBL

X6R3P0

Conserved Domains (10) summary

smart00013
Location:697 → 728

LRRNT; Leucine rich repeat N-terminal domain

smart00082
Location:829 → 878

LRRCT; Leucine rich repeat C-terminal domain

smart00282
Location:1153 → 1286

LamG; Laminin G domain

cd00054
Location:1046 → 1082

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

cd00116
Location:47 → 180

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00031
Location:821 → 833

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:27 → 46

LRR_RI; leucine-rich repeat [structural motif]

pfam12799
Location:294 → 334

LRR_4; Leucine Rich repeats (2 copies)

pfam13855
Location:747 → 807

LRR_8; Leucine rich repeat

cl15307
Location:634 → 683

TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
XM_017008845.2 → XP_016864334.1 slit homolog 2 protein isoform X4

UniProtKB/TrEMBL

X6R3P0

Related

ENSP00000482129.1, ENST00000622093.4
XM_011513910.2 → XP_011512212.2 slit homolog 2 protein isoform X5

Conserved Domains (7) summary

TIGR00864
Location:462 → 643

PCC; polycystin cation channel protein

smart00013
Location:135 → 165

LRRNT; Leucine rich repeat N-terminal domain

smart00282
Location:813 → 946

LamG; Laminin G domain

cd00054
Location:706 → 742

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

sd00031
Location:481 → 493

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:167 → 189

LRR_RI; leucine-rich repeat [structural motif]

NF033189
Location:187 → 484

internalin_A; class 1 internalin InlA

Alternate T2T-CHM13v2.0

Genomic

NC_060928.1 Alternate T2T-CHM13v2.0

Range

20234597..20602238

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_054351262.1 → XP_054207237.1 slit homolog 2 protein isoform X1

UniProtKB/TrEMBL

X6R3P0
XM_054351263.1 → XP_054207238.1 slit homolog 2 protein isoform X2

UniProtKB/TrEMBL

X6R3P0
XM_054351264.1 → XP_054207239.1 slit homolog 2 protein isoform X3

UniProtKB/TrEMBL

X6R3P0
XM_054351265.1 → XP_054207240.1 slit homolog 2 protein isoform X4

UniProtKB/TrEMBL

X6R3P0
XM_054351266.1 → XP_054207241.1 slit homolog 2 protein isoform X5