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    GRK3-AS1 GRK3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100996404, updated on 10-Dec-2024

    Summary

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    Official Symbol
    GRK3-AS1provided by HGNC
    Official Full Name
    GRK3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55679
    See related
    Ensembl:ENSG00000234884 AllianceGenome:HGNC:55679
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 5.1) See more
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    Genomic context

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    See GRK3-AS1 in Genome Data Viewer
    Location:
    22q12.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (25560888..25565416, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (26022040..26026567, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (25956855..25961383, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene conserved acetylation island sequence 2 enhancer Neighboring gene crystallin beta B2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:25868192-25868692 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:25868693-25869193 Neighboring gene uncharacterized LOC124905094 Neighboring gene microRNA 6817 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13561 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:25961339-25961854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18787 Neighboring gene G protein-coupled receptor kinase 3 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:26001784-26002284 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:26015847-26016633 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13564 Neighboring gene YES1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18788 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:26099534-26100733 Neighboring gene RNA, 5S ribosomal pseudogene 494

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Other Names

    • CTA-407F11.8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183556.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    2. NR_183557.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    3. NR_183558.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    4. NR_183559.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    5. NR_183560.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000668059.2

    6. NR_183561.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    7. NR_183562.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    8. NR_183563.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    9. NR_183564.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    10. NR_183565.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    11. NR_183566.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329

    12. NR_183567.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000661676.2

    13. NR_183568.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000818428.1

    14. NR_183569.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000818423.1

    15. NR_183570.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000818424.1

    16. NR_183571.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022329
      Related
      ENST00000818425.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      25560888..25565416 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      26022040..26026567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials