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    Gm5124 predicted pseudogene 5124 [ Mus musculus (house mouse) ]

    Gene ID: 331392, updated on 6-Oct-2024

    Summary

    Official Symbol
    Gm5124provided by MGI
    Official Full Name
    predicted pseudogene 5124provided by MGI
    Primary source
    MGI:MGI:3643622
    See related
    Ensembl:ENSMUSG00000121832 AllianceGenome:MGI:3643622
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG331392
    Expression
    Biased expression in CNS E18 (RPKM 8.5), whole brain E14.5 (RPKM 6.3) and 11 other tissues See more
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    Genomic context

    See Gm5124 in Genome Data Viewer
    Location:
    X A2; X 16.68 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (21227104..21230866)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (21360865..21364627)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930453H23 gene Neighboring gene STARR-seq mESC enhancer starr_46895 Neighboring gene STARR-seq mESC enhancer starr_46896 Neighboring gene predicted gene 6938 Neighboring gene STARR-seq mESC enhancer starr_46898 Neighboring gene STARR-seq mESC enhancer starr_46899 Neighboring gene angiotensin II receptor, type 2 Neighboring gene predicted gene, 22592

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045668.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI426008, AK032684, BM943806
      Related
      ENSMUST00000127554.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      21227104..21230866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198633.3: Suppressed sequence

      Description
      NM_198633.3: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.