U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    A830021M18Rik RIKEN cDNA A830021M18 gene [ Mus musculus (house mouse) ]

    Gene ID: 223483, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    A830021M18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A830021M18 geneprovided by MGI
    Primary source
    MGI:MGI:4437721
    See related
    AllianceGenome:MGI:4437721
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A830021M18
    Summary
    Is expressed in lens. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 12.3), frontal lobe adult (RPKM 0.7) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See A830021M18Rik in Genome Data Viewer
    Location:
    15; 15 B3.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (36726486..36731661)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (36726241..36731417)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene Neighboring gene STARR-seq mESC enhancer starr_38365 Neighboring gene STARR-positive B cell enhancer ABC_E5473 Neighboring gene predicted gene, 41296 Neighboring gene STARR-positive B cell enhancer mm9_chr15:36649081-36649381 Neighboring gene predicted gene, 41297 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:36681031-36681268 Neighboring gene STARR-seq mESC enhancer starr_38374 Neighboring gene STARR-seq mESC enhancer starr_38375 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:36724178-36724450 Neighboring gene predicted gene, 41298 Neighboring gene predicted gene, 34472 Neighboring gene STARR-seq mESC enhancer starr_38379

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      36726486..36731661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003951530.2 RNA Sequence

    2. XR_875151.3 RNA Sequence

    3. XR_875150.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.