U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    4833439L19Rik RIKEN cDNA 4833439L19 gene [ Mus musculus (house mouse) ]

    Gene ID: 97820, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    4833439L19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4833439L19 geneprovided by MGI
    Primary source
    MGI:MGI:1921162
    See related
    Ensembl:ENSMUSG00000025871 AllianceGenome:MGI:1921162
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa1191; P33monox; 4930558H15Rik
    Summary
    Predicted to enable oxidoreductase activity. Located in cytoplasm. Is expressed in several structures, including central nervous system; incisor; sensory organ; trigeminal nerve; and vibrissa. Orthologous to human KIAA1191 (KIAA1191). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in kidney adult (RPKM 208.4), large intestine adult (RPKM 47.6) and 27 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 4833439L19Rik in Genome Data Viewer
    Location:
    13 B1; 13 28.79 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (54699031..54713195, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (54551218..54565382, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene THO complex 3 Neighboring gene STARR-positive B cell enhancer ABC_E10794 Neighboring gene predicted gene, 53205 Neighboring gene STARR-positive B cell enhancer ABC_E7241 Neighboring gene predicted gene 2830 Neighboring gene SUMO-interacting motifs containing 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:54666808-54666917 Neighboring gene predicted gene, 24195 Neighboring gene STARR-positive B cell enhancer ABC_E927 Neighboring gene ADP-ribosylation factor-like 10 Neighboring gene NOP16 nucleolar protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterizing the novel protein p33MONOX. Mishra M, et al. Mol Cell Biochem, 2011 Apr. PMID 21153684
    2. Identification and analysis of genes from the mouse otic vesicle and their association with developmental subprocesses through in situ hybridization. Powles N, et al. Dev Biol, 2004 Apr 1. PMID 15031102
    3. Prediction of the coding sequences of mouse homologues of KIAA gene: IV. The complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Jun 30. PMID 15368895
    4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    5. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative monooxygenase p33MONOX

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252645.1 → NP_001239574.1  putative monooxygenase p33MONOX isoform 2

      See identical proteins and their annotated locations for NP_001239574.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 5' region, which results in a downstream AUG start codon, compared to variant 1. The resulting isoform (2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK173126, BQ924175, BY265900, CD775737
      Consensus CDS
      CCDS56882.1
      UniProtKB/TrEMBL
      D3Z1F7
      Related
      ENSMUSP00000119874.2, ENSMUST00000153065.8
      Conserved Domains (1) summary
      pfam15302
      Location:1 → 284
      P33MONOX; P33 mono-oxygenase

    2. NM_001252646.1 → NP_001239575.1  putative monooxygenase p33MONOX isoform 2

      See identical proteins and their annotated locations for NP_001239575.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two exons in the 5' region, which results in a downstream AUG start codon, compared to variant 1. The resulting isoform (2) has a shorter N-terminus, compared to isoform 1. Variants 2 and 3 encode the same isoform.
      Source sequence(s)
      AK169399, BY265900, CA461006, CD775737
      Consensus CDS
      CCDS56882.1
      UniProtKB/TrEMBL
      D3Z1F7
      Conserved Domains (1) summary
      pfam15302
      Location:1 → 284
      P33MONOX; P33 mono-oxygenase

    3. NM_001252647.1 → NP_001239576.1  putative monooxygenase p33MONOX isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks three exons in the 5' region, which results in a downstream AUG start codon, compared to variant 1. The resulting isoform (3) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AK169399, BY244215, BY265900, CD775737
      UniProtKB/Swiss-Prot
      Q9DBN4
      Conserved Domains (1) summary
      pfam15302
      Location:1 → 198
      P33MONOX; P33 mono-oxygenase

    4. NM_001252648.1 → NP_001239577.1  putative monooxygenase p33MONOX isoform 4

      See identical proteins and their annotated locations for NP_001239577.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks four exons in the 5' region, which results in a downstream AUG start codon, compared to variant 1. The resulting isoform (4) is much shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AK167616, BY265900, CD775737
      UniProtKB/Swiss-Prot
      Q9DBN4
      Conserved Domains (1) summary
      pfam15302
      Location:1 → 96
      P33MONOX; P33 mono-oxygenase

    5. NM_133797.4 → NP_598558.1  putative monooxygenase p33MONOX isoform 1

      See identical proteins and their annotated locations for NP_598558.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AK169399, BY064355, CD775737
      Consensus CDS
      CCDS26529.1
      UniProtKB/Swiss-Prot
      Q3TJ26, Q3UMA7, Q69ZP2, Q8C1J8, Q9D4T9, Q9DBN4
      Related
      ENSMUSP00000026989.9, ENSMUST00000026989.15
      Conserved Domains (1) summary
      pfam15302
      Location:17 → 303
      P33MONOX; P33 mono-oxygenase

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      54699031..54713195 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517478.5 → XP_006517541.1  putative monooxygenase p33MONOX isoform X1

      See identical proteins and their annotated locations for XP_006517541.1

      UniProtKB/Swiss-Prot
      Q3TJ26, Q3UMA7, Q69ZP2, Q8C1J8, Q9D4T9, Q9DBN4
      Conserved Domains (1) summary
      pfam15302
      Location:17 → 303
      P33MONOX; P33 mono-oxygenase

    2. XM_006517479.5 → XP_006517542.1  putative monooxygenase p33MONOX isoform X2

      See identical proteins and their annotated locations for XP_006517542.1

      Conserved Domains (1) summary
      pfam15302
      Location:1 → 96
      P33MONOX; P33 mono-oxygenase
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DBN4.1 GenPept UniProtKB/Swiss-Prot:Q9DBN4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools