U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    1110065P20Rik RIKEN cDNA 1110065P20 gene [ Mus musculus (house mouse) ]

    Gene ID: 68920, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    1110065P20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110065P20 geneprovided by MGI
    Primary source
    MGI:MGI:1916170
    See related
    Ensembl:ENSMUSG00000078570 AllianceGenome:MGI:1916170
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C530005M16Rik
    Summary
    Is expressed in central nervous system; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human C1orf122 (chromosome 1 open reading frame 122). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 60.4), ovary adult (RPKM 37.5) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See 1110065P20Rik in Genome Data Viewer
    Location:
    4 D2.2; 4 57.92 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (124743284..124744479, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (124849485..124850730, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12915 Neighboring gene STARR-positive B cell enhancer ABC_E4664 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:124430874-124431061 Neighboring gene inositol polyphosphate-5-phosphatase B Neighboring gene microRNA 698 Neighboring gene STARR-positive B cell enhancer ABC_E7986 Neighboring gene metal response element binding transcription factor 1 Neighboring gene STARR-seq mESC enhancer starr_11345 Neighboring gene predicted gene, 54256 Neighboring gene mannosidase, endo-alpha-like Neighboring gene yrdC domain containing (E.coli) Neighboring gene RIKEN cDNA 1700125G02 gene Neighboring gene Eph receptor A10

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C1orf122 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142727.2 → NP_001136199.1  uncharacterized protein C1orf122 homolog isoform 2

      See identical proteins and their annotated locations for NP_001136199.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1. Variants 2 and 6 both encode the same isoform (2).
      Source sequence(s)
      AL606933
      Consensus CDS
      CCDS51298.1
      UniProtKB/TrEMBL
      E9Q9M4
      Related
      ENSMUSP00000130892.2, ENSMUST00000163946.2
      Conserved Domains (1) summary
      pfam15855
      Location:1 → 47
      DUF4726; Domain of unknown function (DUF4726)

    2. NM_001347196.2 → NP_001334125.1  uncharacterized protein C1orf122 homolog isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes isoform 1.
      Source sequence(s)
      AL606933
      Consensus CDS
      CCDS84792.1
      UniProtKB/Swiss-Prot
      B1ARW8
      Related
      ENSMUSP00000101796.3, ENSMUST00000106190.10

    3. NM_001404054.1 → NP_001390983.1  uncharacterized protein C1orf122 homolog isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
      Source sequence(s)
      AL606933

    4. NM_001404055.1 → NP_001390984.1  uncharacterized protein C1orf122 homolog isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL606933

    5. NM_001404056.1 → NP_001390985.1  uncharacterized protein C1orf122 homolog isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL606933

    6. NM_001404057.1 → NP_001390986.1  uncharacterized protein C1orf122 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL606933
      UniProtKB/TrEMBL
      E9Q9M4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      124743284..124744479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B1ARW8.1 GenPept UniProtKB/Swiss-Prot:B1ARW8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools