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    Rsrp1 arginine and serine rich protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362626, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Rsrp1provided by RGD
    Official Full Name
    arginine and serine rich protein 1provided by RGD
    Primary source
    RGD:1359529
    See related
    AllianceGenome:RGD:1359529
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359529
    Summary
    Predicted to be involved in spliceosomal complex assembly. Predicted to be located in nucleus. Orthologous to human RSRP1 (arginine and serine rich protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 565.3), Thymus (RPKM 418.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rsrp1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (152431448..152435202)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (147147774..147151523)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (153260930..153264669)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134487008 Neighboring gene Rh blood group, D antigen Neighboring gene transmembrane protein 50A Neighboring gene SYF2 pre-mRNA-splicing factor Neighboring gene uncharacterized LOC134479038

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in spliceosomal complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    arginine/serine-rich protein 1
    Names
    UPF0471 protein C1orf63 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014193.2 → NP_001014215.2  arginine/serine-rich protein 1

      See identical proteins and their annotated locations for NP_001014215.2

      Status: VALIDATED

      Source sequence(s)
      BF282923, BP475626, CB811984, CO405856
      UniProtKB/Swiss-Prot
      Q5U2S0
      UniProtKB/TrEMBL
      A6IT40, A6IT41
      Conserved Domains (1) summary
      pfam17069
      Location:6 → 300
      RSRP; Arginine/Serine-Rich protein 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      152431448..152435202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288065.1 → XP_063144135.1  arginine/serine-rich protein 1 isoform X1

      UniProtKB/TrEMBL
      A6IT42

    2. XM_063288067.1 → XP_063144137.1  arginine/serine-rich protein 1 isoform X1

      UniProtKB/TrEMBL
      A6IT42

    3. XM_063288068.1 → XP_063144138.1  arginine/serine-rich protein 1 isoform X2

    RNA

    1. XR_005504497.2 RNA Sequence

    2. XR_010066425.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5U2S0.2 GenPept UniProtKB/Swiss-Prot:Q5U2S0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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