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    LINC01256 long intergenic non-protein coding RNA 1256 [ Homo sapiens (human) ]

    Gene ID: 104355285, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01256provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1256provided by HGNC
    Primary source
    HGNC:HGNC:49895
    See related
    Ensembl:ENSG00000251398 AllianceGenome:HGNC:49895
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TCONS_l2_00021715
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01256 in Genome Data Viewer
    Location:
    4q28.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (132591089..132678503)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (135914802..136002189)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (133512244..133599658)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377428 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:133042782-133042957 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133045368-133046113 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133046114-133046858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133090465-133090966 Neighboring gene elongation factor for RNA polymerase II 2 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:133416211-133416731 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:133416732-133417251 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:133440023-133441222 Neighboring gene alanyl-tRNA synthetase 1 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133579472-133579972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133730595-133731094 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133865245-133865746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133865747-133866246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133879807-133880307 Neighboring gene uncharacterized LOC124900861 Neighboring gene uncharacterized LOC124900862

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126401.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC098858, BX088800
      Related
      ENST00000513270.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      132591089..132678503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      135914802..136002189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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