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    XRCC6P5 X-ray repair cross complementing 6 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 442459, updated on 10-Dec-2024

    Summary

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    Official Symbol
    XRCC6P5provided by HGNC
    Official Full Name
    X-ray repair cross complementing 6 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:45187
    See related
    Ensembl:ENSG00000215070 AllianceGenome:HGNC:45187
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See XRCC6P5 in Genome Data Viewer
    Location:
    Xq22.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (99719130..99721206, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (98161388..98163464, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (98974128..98976204, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3077 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:98111402-98111562 Neighboring gene NANOG hESC enhancer GRCh37_chrX:98340142-98340649 Neighboring gene TEX101 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chrX:99004673-99005174 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:99090809-99091310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:99194631-99195245 Neighboring gene B3GNT2 pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:99325109-99326054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99389825-99390366 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99390367-99390907 Neighboring gene CTDSPL2 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. The association of DNA repair gene polymorphisms with the development and progression of renal cell carcinoma. Sakano S, et al. Ann Oncol, 2007 Nov. PMID 17712032

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The association between DNA repair gene polymorphism and the genetic susceptibility and progression of renal cell carcinoma are not specific.
      Title: The association of DNA repair gene polymorphisms with the development and progression of renal cell carcinoma.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • DNA repair protein
    • X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5
    • X-ray repair complementing defective repair pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_061628.2 

      Range
      101..2177
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      99719130..99721206 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      98161388..98163464 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001127438.1: Suppressed sequence

      Description
      NM_001127438.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.

    2. NR_024608.1: Suppressed sequence

      Description
      NR_024608.1: This RefSeq was removed because there is insufficient evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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