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    LINC00910 long intergenic non-protein coding RNA 910 [ Homo sapiens (human) ]

    Gene ID: 100130581, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00910provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 910provided by HGNC
    Primary source
    HGNC:HGNC:44361
    See related
    Ensembl:ENSG00000188825 AllianceGenome:HGNC:44361
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00910 in Genome Data Viewer
    Location:
    17q21.31
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (43369845..43388898, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (44219617..44238672, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (41447213..41466266, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41382086-41382759 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41392761-41393398 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41393399-41394036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:41399501-41400008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41400009-41400516 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41400517-41401024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12240 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8551 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:41428482-41429681 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:41437411-41438106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8553 Neighboring gene Sharpr-MPRA regulatory region 625 Neighboring gene U2 spliceosomal RNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41445663-41446502 Neighboring gene uncharacterized LOC105371785 Neighboring gene uncharacterized LOC124904007 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41464317-41464832 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41464833-41465348 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41465639-41466392 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41466393-41467146 Neighboring gene RNA, U2 small nuclear 4, pseudogene Neighboring gene RNA, U6 small nuclear 1137, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:41476485-41476988 Neighboring gene ARF like GTPase 4D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation. Wu SF, et al. Proc Natl Acad Sci U S A, 2020 Jun 23. PMID 32513696, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • CTD-3014M21.4

    Clone Names

    • FLJ18727, FLJ41591, DKFZp686H1819

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027412.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.
      Source sequence(s)
      AC087650, BC035366
      Related
      ENST00000341011.11

    2. NR_027413.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC087650
      Related
      ENST00000592135.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      43369845..43388898 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      44219617..44238672 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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