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    SPATA31E1 SPATA31 subfamily E member 1 [ Homo sapiens (human) ]

    Gene ID: 286234, updated on 10-Dec-2024

    Summary

    Official Symbol
    SPATA31E1provided by HGNC
    Official Full Name
    SPATA31 subfamily E member 1provided by HGNC
    Primary source
    HGNC:HGNC:26672
    See related
    Ensembl:ENSG00000177992 AllianceGenome:HGNC:26672
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C9orf79; FAM75E1
    Summary
    Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis (RPKM 4.8) See more
    Orthologs
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    Genomic context

    See SPATA31E1 in Genome Data Viewer
    Location:
    9q22.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (87882877..87888903)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (100036904..100042930)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90497792..90503818)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987091 Neighboring gene uncharacterized LOC497256 Neighboring gene uncharacterized LOC124902199 Neighboring gene SPATA31 subfamily C member 1 Neighboring gene zinc finger protein 598, E3 ubiquitin ligase pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Interactions

    General gene information

    Clone Names

    • FLJ35866

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in cell differentiation  
    involved_in spermatogenesis  
    Component Evidence Code Pubs
    located_in membrane  

    General protein information

    Preferred Names
    spermatogenesis-associated protein 31E1
    Names
    FAM75-like protein C9orf79
    XXyac-YM21GA2.5
    family with sequence similarity 75, member E1
    protein FAM75E1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178828.5NP_849150.3  spermatogenesis-associated protein 31E1

      See identical proteins and their annotated locations for NP_849150.3

      Status: VALIDATED

      Source sequence(s)
      AK125845, AL772337, AL834438
      Consensus CDS
      CCDS6676.1
      UniProtKB/Swiss-Prot
      B2RPB1, Q5SQC9, Q6ZUB1, Q8NA41, Q8ND27
      Related
      ENSP00000322640.5, ENST00000325643.6
      Conserved Domains (2) summary
      pfam14650
      Location:422789
      FAM75; FAM75 family
      pfam15371
      Location:116183
      DUF4599; Domain of unknown function (DUF4599)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      87882877..87888903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      100036904..100042930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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