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    LINC00951 long intergenic non-protein coding RNA 951 [ Homo sapiens (human) ]

    Gene ID: 401260, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00951provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 951provided by HGNC
    Primary source
    HGNC:HGNC:48662
    See related
    Ensembl:ENSG00000226070 AllianceGenome:HGNC:48662
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00951 in Genome Data Viewer
    Location:
    6p21.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (40344345..40356006, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (40172255..40183916, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (40312084..40323745, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375049 Neighboring gene uncharacterized LOC105375050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:40254197-40254754 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:40272571-40272754 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40275763-40276330 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40276331-40276897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40289806-40290328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40297426-40298064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40298065-40298703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:40311845-40312560 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:40313277-40313990 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:40327493-40328118 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:40346056-40347255 Neighboring gene testis development related 1 Neighboring gene RNA, U6 small nuclear 250, pseudogene Neighboring gene leucine rich repeat and fibronectin type III domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. lncRNA-uc003opf.1 rs11752942 A>G polymorphism decreases neuroblastoma risk in Chinese children. Pan J, et al. Cell Cycle, 2020 Sep. PMID 32809919, Free PMC Article
    2. A genetic polymorphism in lincRNA-uc003opf.1 is associated with susceptibility to esophageal squamous cell carcinoma in Chinese populations. Wu H, et al. Carcinogenesis, 2013 Dec. PMID 23872665
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. lncRNA-uc003opf.1 rs11752942 A>G polymorphism decreases neuroblastoma risk in Chinese children.
      Title: lncRNA-uc003opf.1 rs11752942 A>G polymorphism decreases neuroblastoma risk in Chinese children.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • lincRNA-uc003opf.1

    Clone Names

    • FLJ41649

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038887.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK123643, AL139275
      Related
      ENST00000700329.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      40344345..40356006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      40172255..40183916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001001705.2: Suppressed sequence

      Description
      NM_001001705.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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