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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001159284.2 → NP_001152756.1 smoothelin isoform b
See identical proteins and their annotated locations for NP_001152756.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR, the 3' UTR, and the 3' coding sequence compared to variant 3. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 1, 2, and 4 all encode the same isoform (b).
- Source sequence(s)
-
AL713875
- Consensus CDS
-
CCDS24366.1
- UniProtKB/TrEMBL
-
D3Z3Q3
- Related
- ENSMUSP00000133155.2, ENSMUST00000170588.8
- Conserved Domains (2) summary
-
- cd00014
Location:808 → 908
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:568 → 617
- Smoothelin; Smoothelin cytoskeleton protein
-
NM_001284427.2 → NP_001271356.1 smoothelin isoform a
See identical proteins and their annotated locations for NP_001271356.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) encodes the longest isoform (a).
- Source sequence(s)
-
AL713875
- Consensus CDS
-
CCDS70129.1
- UniProtKB/Swiss-Prot
- Q3TCV2, Q6NSW1, Q8CD93, Q921U8, Q9JHG8, Q9JLU7, Q9R0D0, Q9R253, Q9Z0Q2
- UniProtKB/TrEMBL
-
D3Z3Q3
- Related
- ENSMUSP00000074621.4, ENSMUST00000075118.10
- Conserved Domains (3) summary
-
- PHA03247
Location:107 → 454
- PHA03247; large tegument protein UL36; Provisional
- cd00014
Location:808 → 912
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:570 → 617
- Smoothelin; Smoothelin cytoskeleton protein
-
NM_001284428.2 → NP_001271357.1 smoothelin isoform b
See identical proteins and their annotated locations for NP_001271357.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, the 3' UTR, and the 3' coding sequence compared to variant 3. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 1, 2, and 4 all encode the same isoform (b).
- Source sequence(s)
-
AL713875
- Consensus CDS
-
CCDS24366.1
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (2) summary
-
- cd00014
Location:808 → 908
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:568 → 617
- Smoothelin; Smoothelin cytoskeleton protein
-
NM_001284429.1 → NP_001271358.1 smoothelin isoform c
See identical proteins and their annotated locations for NP_001271358.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains an alternate exon in the 5' end and differs in the 3' UTR and coding sequence compared to variant 3. The resulting isoform (c) is shorter at the N-terminus and has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AK030932, AK085412, AL713875, AW490128
- UniProtKB/Swiss-Prot
-
Q921U8
- Related
-
ENSMUST00000154861.8
- Conserved Domains (2) summary
-
- cd00014
Location:559 → 659
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:319 → 368
- Smoothelin; Smoothelin cytoskeleton protein
-
NM_001425501.1 → NP_001412430.1 smoothelin isoform b
Status: VALIDATED
- Source sequence(s)
-
AL713875
- UniProtKB/TrEMBL
-
D3Z3Q3
-
NM_001425502.1 → NP_001412431.1 smoothelin isoform d
Status: VALIDATED
- Source sequence(s)
-
AL713875
- UniProtKB/TrEMBL
-
A0AAQ4VMU7
- Related
- ENSMUSP00000160000.1, ENSMUST00000249902.1
-
NM_001425503.1 → NP_001412432.1 smoothelin isoform e
Status: VALIDATED
- Source sequence(s)
-
AL713875
-
NM_001425504.1 → NP_001412433.1 smoothelin isoform f
Status: VALIDATED
- Source sequence(s)
-
AL713875
- UniProtKB/TrEMBL
- D3YVS1, Q9D7A0
- Related
- ENSMUSP00000020718.6, ENSMUST00000020718.11
-
NM_013870.4 → NP_038898.2 smoothelin isoform b
See identical proteins and their annotated locations for NP_038898.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 3. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 1, 2, and 4 all encode the same isoform (b).
- Source sequence(s)
-
AL713875
- Consensus CDS
-
CCDS24366.1
- UniProtKB/TrEMBL
-
D3Z3Q3
- Related
- ENSMUSP00000020721.9, ENSMUST00000020721.15
- Conserved Domains (2) summary
-
- cd00014
Location:808 → 908
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:568 → 617
- Smoothelin; Smoothelin cytoskeleton protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000077.7 Reference GRCm39 C57BL/6J
- Range
-
3467522..3489337 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036156750.1 → XP_036012643.1 smoothelin isoform X9
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:107 → 454
- PHA03247; large tegument protein UL36; Provisional
- pfam12510
Location:570 → 617
- Smoothelin; Smoothelin cytoskeleton protein
- cd21259
Location:730 → 841
- CH_SMTNB; calponin homology (CH) domain found in smoothelin-B and similar proteins
-
XM_017314586.3 → XP_017170075.1 smoothelin isoform X4
- UniProtKB/Swiss-Prot
- Q3TCV2, Q6NSW1, Q8CD93, Q921U8, Q9JHG8, Q9JLU7, Q9R0D0, Q9R253, Q9Z0Q2
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:107 → 454
- PHA03247; large tegument protein UL36; Provisional
- cd00014
Location:808 → 912
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:570 → 617
- Smoothelin; Smoothelin cytoskeleton protein
-
XM_006514724.4 → XP_006514787.1 smoothelin isoform X8
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:107 → 454
- PHA03247; large tegument protein UL36; Provisional
- cd00014
Location:839 → 943
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:601 → 648
- Smoothelin; Smoothelin cytoskeleton protein
-
XM_036156747.1 → XP_036012640.1 smoothelin isoform X5
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:135 → 482
- PHA03247; large tegument protein UL36; Provisional
- pfam12510
Location:598 → 645
- Smoothelin; Smoothelin cytoskeleton protein
- cd21258
Location:758 → 868
- CH_SMTNA; calponin homology (CH) domain found in smoothelin-A and similar proteins
-
XM_036156748.1 → XP_036012641.1 smoothelin isoform X6
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:135 → 482
- PHA03247; large tegument protein UL36; Provisional
- pfam12510
Location:598 → 645
- Smoothelin; Smoothelin cytoskeleton protein
- cd21259
Location:758 → 869
- CH_SMTNB; calponin homology (CH) domain found in smoothelin-B and similar proteins
-
XM_030246062.1 → XP_030101922.1 smoothelin isoform X1
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:135 → 482
- PHA03247; large tegument protein UL36; Provisional
- cd00014
Location:836 → 940
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:598 → 645
- Smoothelin; Smoothelin cytoskeleton protein
-
XM_030246063.1 → XP_030101923.1 smoothelin isoform X2
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:135 → 482
- PHA03247; large tegument protein UL36; Provisional
- pfam00307
Location:836 → 936
- CH; Calponin homology (CH) domain
- pfam12510
Location:598 → 645
- Smoothelin; Smoothelin cytoskeleton protein
-
XM_030246064.1 → XP_030101924.1 smoothelin isoform X3
- UniProtKB/TrEMBL
-
D3Z3Q3
- Conserved Domains (3) summary
-
- PHA03247
Location:135 → 482
- PHA03247; large tegument protein UL36; Provisional
- cd00014
Location:836 → 910
- CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
- pfam12510
Location:598 → 645
- Smoothelin; Smoothelin cytoskeleton protein
-
XM_036156749.1 → XP_036012642.1 smoothelin isoform X7
- Conserved Domains (3) summary
-
- pfam12510
Location:171 → 218
- Smoothelin; Smoothelin cytoskeleton protein
- cl00030
Location:407 → 489
- CH_SF; calponin homology (CH) domain superfamily
- cl21454
Location:28 → 121
- NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins