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    4921536K21Rik RIKEN cDNA 4921536K21 gene [ Mus musculus (house mouse) ]

    Gene ID: 67430, updated on 27-Nov-2024

    Summary

    Official Symbol
    4921536K21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4921536K21 geneprovided by MGI
    Primary source
    MGI:MGI:1914680
    See related
    Ensembl:ENSMUSG00000020434 AllianceGenome:MGI:1914680
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C5orf52 (chromosome 5 open reading frame 52). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 23.8) and genital fat pad adult (RPKM 0.8) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 4921536K21Rik in Genome Data Viewer
    Location:
    11 A1; 11 2.73 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3836087..3845308, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3886087..3895308, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_28364 Neighboring gene predicted gene, 51880 Neighboring gene STARR-seq mESC enhancer starr_28365 Neighboring gene STARR-positive B cell enhancer ABC_E8382 Neighboring gene nucleolar protein 8 pseudogene Neighboring gene dual specificity phosphatase 18 Neighboring gene solute carrier family 35, member E4 Neighboring gene transcobalamin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C5orf52 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026150.3NP_080426.1  uncharacterized protein C5orf52 homolog

      See identical proteins and their annotated locations for NP_080426.1

      Status: VALIDATED

      Source sequence(s)
      AK049235, AL731853
      Consensus CDS
      CCDS24368.1
      UniProtKB/Swiss-Prot
      Q3TSB3, Q9CR34
      Related
      ENSMUSP00000020712.5, ENSMUST00000020712.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      3836087..3845308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001780041.2 RNA Sequence