U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Prr30 proline rich 30 [ Mus musculus (house mouse) ]

    Gene ID: 76627, updated on 27-Nov-2024

    Summary

    Official Symbol
    Prr30provided by MGI
    Official Full Name
    proline rich 30provided by MGI
    Primary source
    MGI:MGI:1923877
    See related
    Ensembl:ENSMUSG00000042888 AllianceGenome:MGI:1923877
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700110M21Rik
    Summary
    Orthologous to human PRR30 (proline rich 30). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 311.5) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Prr30 in Genome Data Viewer
    Location:
    14 E2.3; 14 50.9 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (101435126..101437840, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (101197690..101200404, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_37469 Neighboring gene predicted gene, 23538 Neighboring gene STARR-seq mESC enhancer starr_37471 Neighboring gene predicted gene, 46481 Neighboring gene STARR-seq mESC enhancer starr_37472 Neighboring gene STARR-seq mESC enhancer starr_37473 Neighboring gene predicted gene, 34361 Neighboring gene STARR-seq mESC enhancer starr_37474 Neighboring gene heat shock protein 1 (chaperonin), pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029680.1NP_083956.1  proline-rich protein 30

      See identical proteins and their annotated locations for NP_083956.1

      Status: VALIDATED

      Source sequence(s)
      AK007164, BX521393, CT010516
      Consensus CDS
      CCDS36999.1
      UniProtKB/Swiss-Prot
      E9QQ59, Q9D9B7
      Related
      ENSMUSP00000060206.5, ENSMUST00000057718.11
      Conserved Domains (1) summary
      pfam15728
      Location:1400
      DUF4679; Domain of unknown function (DUF4679)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      101435126..101437840 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006519675.1XP_006519738.1  proline-rich protein 30 isoform X1

      See identical proteins and their annotated locations for XP_006519738.1

      UniProtKB/Swiss-Prot
      E9QQ59, Q9D9B7
      Related
      ENSMUSP00000139590.2, ENSMUST00000187304.2
      Conserved Domains (1) summary
      pfam15728
      Location:1400
      DUF4679; Domain of unknown function (DUF4679)