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    1700020L24Rik RIKEN cDNA 1700020L24 gene [ Mus musculus (house mouse) ]

    Gene ID: 66330, updated on 27-Nov-2024

    Summary

    Official Symbol
    1700020L24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700020L24 geneprovided by MGI
    Primary source
    MGI:MGI:1913580
    See related
    Ensembl:ENSMUSG00000035085 AllianceGenome:MGI:1913580
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C17orf50 (chromosome 17 open reading frame 50). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 84.4), stomach adult (RPKM 17.2) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See 1700020L24Rik in Genome Data Viewer
    Location:
    11 C; 11 50.38 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (83328520..83332058)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (83437694..83441232)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RAS-like, family 10, member B Neighboring gene growth arrest-specific 2 like 2 Neighboring gene matrix metallopeptidase 28 (epilysin) Neighboring gene STARR-positive B cell enhancer ABC_E1836 Neighboring gene TATA-box binding protein associated factor 15 Neighboring gene STARR-seq mESC enhancer starr_30202 Neighboring gene STARR-seq mESC enhancer starr_30203 Neighboring gene predicted gene, 32650 Neighboring gene HEAT repeat containing 9 Neighboring gene predicted gene, 23247

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C17orf50 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025492.3NP_079768.2  uncharacterized protein C17orf50 homolog

      See identical proteins and their annotated locations for NP_079768.2

      Status: VALIDATED

      Source sequence(s)
      AK006174, BC152320
      Consensus CDS
      CCDS25165.1
      UniProtKB/Swiss-Prot
      A7MCU3, Q8C1R3, Q9DAI8
      Related
      ENSMUSP00000042098.5, ENSMUST00000037378.6
      Conserved Domains (1) summary
      pfam15470
      Location:5169
      DUF4637; Domain of unknown function (DUF4637)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      83328520..83332058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036156898.1XP_036012791.1  uncharacterized protein C17orf50 homolog isoform X1

      Conserved Domains (1) summary
      pfam15470
      Location:40202
      DUF4637; Domain of unknown function (DUF4637)