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    Rnu5g RNA, U5G small nuclear [ Mus musculus (house mouse) ]

    Gene ID: 97418, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rnu5gprovided by MGI
    Official Full Name
    RNA, U5G small nuclearprovided by MGI
    Primary source
    MGI:MGI:2157900
    See related
    Ensembl:ENSMUSG00000119286 AllianceGenome:MGI:2157900
    Gene type
    snRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    U5a; Rnu5a
    Summary
    Located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Note: GeneID 97418 is defined by sequence and annotation (5S small nuclear RNA) of M10336.1 on chromosome 9 but was incorrectly annotated on chromosome 13 on NCBI's Build 37.2. [17 Jun 2014]
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    Genomic context

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    See Rnu5g in Genome Data Viewer
    Location:
    9; 9 C
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (65109008..65109123, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (65201726..65201841, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily, DCC subclass, member 3 Neighboring gene STARR-seq mESC enhancer starr_24448 Neighboring gene STARR-positive B cell enhancer ABC_E3840 Neighboring gene STARR-positive B cell enhancer ABC_E2894 Neighboring gene predicted gene, 40527 Neighboring gene predicted gene, 25313 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:65064991-65065144 Neighboring gene poly (ADP-ribose) polymerase family, member 16 Neighboring gene predicted gene, 36538 Neighboring gene STARR-seq mESC enhancer starr_24450 Neighboring gene cartilage intermediate layer protein, nucleotide pyrophosphohydrolase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of nuclear 5S RNA of mouse cells. Kato N, et al. Biochem Biophys Res Commun, 1981 Apr 30. PMID 6167269
    2. Ddx20, an Olig2 binding factor, governs the survival of neural and oligodendrocyte progenitor cells via proper Mdm2 splicing and p53 suppression. Bizen N, et al. Cell Death Differ, 2022 May. PMID 34974536, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • 5S U5 small nuclear RNA

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002852.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC110235
      Related
      ENSMUST00000101817.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      65109008..65109123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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