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    TBP TATA-box binding protein [ Gallus gallus (chicken) ]

    Gene ID: 395995, updated on 3-Dec-2024

    Summary

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    Symbol
    TBPprovided by CGNC
    Full Name
    TATA-box binding proteinprovided by CGNC
    Primary source
    CGNC:8484
    See related
    Ensembl:ENSGALG00010007866
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TBP1
    Orthologs
    human mouse all
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    Genomic context

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    See TBP in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (40386566..40397804, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (40284404..40295638, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene C1orf131 homolog Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene programmed cell death 2 Neighboring gene proteasome subunit beta 1 Neighboring gene family with sequence similarity 120B Neighboring gene uncharacterized LOC121110373

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two forms of avian(chicken) TATA-binding protein mRNA generated by alternative polyadenylation. Yamauchi J, et al. Biochem Biophys Res Commun, 1997 May 19. PMID 9177284
    2. Conserved alternative and antisense transcripts at the programmed cell death 2 locus. Mihola O, et al. BMC Genomics, 2007 Jan 18. PMID 17233890, Free PMC Article
    3. Genetic variation among chicken lines and mammalian species in specific genes. Zhou H, et al. Poult Sci, 2001 Mar. PMID 11261557
    4. Comparative analysis of the PDCD2-TBP-PSMB1 region in vertebrates. Trachtulec Z, et al. Gene, 2004 Jun 23. PMID 15194198
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA-box-binding protein
    Names
    TA-TA binding protein 1
    TATA sequence-binding protein
    TATA-binding factor
    TATA-binding protein
    TATA-box factor
    transcription initiation factor TFIID TBP subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396190.1 → NP_001383119.1  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    2. NM_001396191.1 → NP_001383120.1  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Related
      ENSGALP00010010278.1, ENSGALT00010018728.1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    3. NM_001396192.1 → NP_001383121.1  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    4. NM_001396193.1 → NP_001383122.1  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    5. NM_001396194.1 → NP_001383123.1  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    6. NM_205103.2 → NP_990434.2  TATA-box-binding protein

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000063
      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      40386566..40397804 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025148547.3 → XP_025004315.1  TATA-box-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
      Conserved Domains (1) summary
      PLN00062
      Location:125 → 301
      PLN00062; TATA-box-binding protein; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      40284404..40295638 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046913188.1 → XP_046769144.1  TATA-box-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A1L1RPU7, B0FLP2, F7BGR1, Q6JLB1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O13270.1 GenPept UniProtKB/Swiss-Prot:O13270

    Gene LinkOut

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