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    RPS15A ribosomal protein S15a [ Gallus gallus (chicken) ]

    Gene ID: 427675, updated on 17-Aug-2024

    Summary

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    Symbol
    RPS15Aprovided by CGNC
    Full Name
    ribosomal protein S15aprovided by CGNC
    Primary source
    CGNC:5109
    See related
    Ensembl:ENSGALG00010020890
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RPS15A in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (8326858..8331648, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (8323362..8328152, complement)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene xylosyltransferase 1 Neighboring gene microRNA 1644 Neighboring gene uncharacterized LOC101748004 Neighboring gene uncharacterized LOC124417198 Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 1 Neighboring gene SMG1, nonsense mediated mRNA decay associated PI3K related kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S15a
    XP_001234300.1
    XP_003642170.3
    XP_004945343.1
    XP_040539863.1
    XP_040539864.1
    XP_040539865.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8326858..8331648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004945286.5 → XP_004945343.1  40S ribosomal protein S15a isoform X2

      See identical proteins and their annotated locations for XP_004945343.1

      UniProtKB/TrEMBL
      A0A3Q3A7P6
      Conserved Domains (1) summary
      PTZ00158
      Location:1 → 130
      PTZ00158; 40S ribosomal protein S15A; Provisional

    2. XM_003642122.6 → XP_003642170.3  40S ribosomal protein S15a isoform X1

      Conserved Domains (1) summary
      PTZ00158
      Location:21 → 150
      PTZ00158; 40S ribosomal protein S15A; Provisional

    3. XM_001234299.7 → XP_001234300.1  40S ribosomal protein S15a isoform X2

      See identical proteins and their annotated locations for XP_001234300.1

      UniProtKB/TrEMBL
      A0A3Q3A7P6
      Related
      ENSGALP00010029803.1, ENSGALT00010050487.1
      Conserved Domains (1) summary
      PTZ00158
      Location:1 → 130
      PTZ00158; 40S ribosomal protein S15A; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8323362..8328152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040683930.2 → XP_040539864.1  40S ribosomal protein S15a isoform X2

      UniProtKB/TrEMBL
      A0A3Q3A7P6
      Conserved Domains (1) summary
      PTZ00158
      Location:1 → 130
      PTZ00158; 40S ribosomal protein S15A; Provisional

    2. XM_040683929.2 → XP_040539863.1  40S ribosomal protein S15a isoform X1

      Conserved Domains (1) summary
      PTZ00158
      Location:21 → 150
      PTZ00158; 40S ribosomal protein S15A; Provisional

    3. XM_040683931.2 → XP_040539865.1  40S ribosomal protein S15a isoform X2

      UniProtKB/TrEMBL
      A0A3Q3A7P6
      Conserved Domains (1) summary
      PTZ00158
      Location:1 → 130
      PTZ00158; 40S ribosomal protein S15A; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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