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    CNOT10 CCR4-NOT transcription complex subunit 10 [ Gallus gallus (chicken) ]

    Gene ID: 420669, updated on 3-Dec-2024

    Summary

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    Official Symbol
    CNOT10provided by CGNC
    Official Full Name
    CCR4-NOT transcription complex subunit 10provided by CGNC
    Primary source
    CGNC:8735
    See related
    Ensembl:ENSGALG00010017597
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See CNOT10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (40382192..40433058)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (40432064..40483027)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121113112 Neighboring gene CKLF like MARVEL transmembrane domain containing 6 Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene uncharacterized LOC121109973 Neighboring gene tripartite motif containing 71 Neighboring gene uncharacterized LOC121113087

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006364.3 → NP_001006364.1  CCR4-NOT transcription complex subunit 10

      See identical proteins and their annotated locations for NP_001006364.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000037
      UniProtKB/Swiss-Prot
      Q5ZIW2
      UniProtKB/TrEMBL
      A0A8V0Z9B3
      Related
      ENSGALP00010025044.1, ENSGALT00010042554.1
      Conserved Domains (3) summary
      sd00006
      Location:296 → 321
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:296 → 325
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:249 → 321
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      40382192..40433058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046923225.1 → XP_046779181.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    2. XM_046923220.1 → XP_046779176.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    3. XM_046923219.1 → XP_046779175.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    4. XM_046923234.1 → XP_046779190.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    5. XM_046923232.1 → XP_046779188.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    6. XM_040682316.2 → XP_040538250.1  CCR4-NOT transcription complex subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z3I2, A0A8V0Z9B3
      Related
      ENSGALP00010025036.1, ENSGALT00010042546.1
      Conserved Domains (2) summary
      smart00028
      Location:293 → 322
      TPR; Tetratricopeptide repeats
      sd00006
      Location:293 → 318
      TPR; TPR repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      40432064..40483027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046911205.1 → XP_046767161.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    2. XM_046911206.1 → XP_046767162.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    3. XM_046911204.1 → XP_046767160.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    4. XM_046911208.1 → XP_046767164.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    5. XM_046911207.1 → XP_046767163.1  CCR4-NOT transcription complex subunit 10 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z295

    6. XM_046911203.1 → XP_046767159.1  CCR4-NOT transcription complex subunit 10 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z3I2, A0A8V0Z9B3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZIW2.1 GenPept UniProtKB/Swiss-Prot:Q5ZIW2

    Gene LinkOut

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