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    ACER3 alkaline ceramidase 3 [ Gallus gallus (chicken) ]

    Gene ID: 419087, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ACER3provided by CGNC
    Official Full Name
    alkaline ceramidase 3provided by CGNC
    Primary source
    CGNC:483
    See related
    Ensembl:ENSGALG00010002211
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    PHCA
    Orthologs
    human mouse all
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    Genomic context

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    See ACER3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (193197716..193256660, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (193268117..193327068, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene myosin VIIA Neighboring gene calpain 5 Neighboring gene olfactory marker protein Neighboring gene tsukushi, small leucine rich proteoglycan Neighboring gene uncharacterized LOC124417121

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in ceramide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phytosphingosine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alkaline ceramidase 3
    Names
    phytoceramidase, alkaline
    XP_040513536.1
    XP_417279.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      193197716..193256660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_417279.8 → XP_417279.1  alkaline ceramidase 3

      UniProtKB/TrEMBL
      A0A8V0X8K0
      Related
      ENSGALP00010002966.1, ENSGALT00010004977.1
      Conserved Domains (1) summary
      pfam05875
      Location:9 → 260
      Ceramidase

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      193268117..193327068 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040657602.2 → XP_040513536.1  alkaline ceramidase 3

      UniProtKB/TrEMBL
      A0A8V0X8K0
      Conserved Domains (1) summary
      pfam05875
      Location:9 → 260
      Ceramidase
    Nucleotide Protein Strain
    Heading Accession and Version

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