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    RBM15B RNA binding motif protein 15B [ Gallus gallus (chicken) ]

    Gene ID: 770664, updated on 17-Aug-2024

    Summary

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    Symbol
    RBM15Bprovided by CGNC
    Full Name
    RNA binding motif protein 15Bprovided by CGNC
    Primary source
    CGNC:1686
    See related
    Ensembl:ENSGALG00010028206
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    MANF; ARMET
    Orthologs
    human mouse all
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    Genomic context

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    See RBM15B in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (2325047..2328130)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (2379628..2382711)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 3 Neighboring gene uncharacterized LOC107054371 Neighboring gene mesencephalic astrocyte derived neurotrophic factor Neighboring gene DDB1 and CUL4 associated factor 1 Neighboring gene uncharacterized LOC121106622 Neighboring gene guanylate-binding protein 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative RNA-binding protein 15B
    Names
    arginine-rich, mutated in early stage tumors
    chromosome 3p21.1 gene sequence
    mesencephalic astrocyte-derived neurotrophic factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2325047..2328130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015292920.4 → XP_015148406.3  putative RNA-binding protein 15B

      UniProtKB/TrEMBL
      A0A8V1A818
      Related
      ENSGALP00010042097.1, ENSGALT00010068354.1
      Conserved Domains (3) summary
      TIGR01628
      Location:359 → 530
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12309
      Location:366 → 444
      RRM2_Spen; RNA recognition motif 2 (RRM2) found in the Spen (split end) protein family
      pfam07267
      Location:373 → 696
      Nucleo_P87; Nucleopolyhedrovirus capsid protein P87

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2379628..2382711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040681794.2 → XP_040537728.1  putative RNA-binding protein 15B

      Conserved Domains (4) summary
      pfam07744
      Location:738 → 912
      SPOC; SPOC domain
      cd12556
      Location:360 → 444
      RRM2_RBM15B; RNA recognition motif 2 (RRM2) found in putative RNA binding motif protein 15B (RBM15B) from vertebrate
      cd12558
      Location:447 → 522
      RRM3_RBM15B; RNA recognition motif 3 (RRM3) found in putative RNA-binding protein 15B (RBM15B) from vertebrate
      cl17169
      Location:173 → 259
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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