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    SPTSSB serine palmitoyltransferase, small subunit B [ Gallus gallus (chicken) ]

    Gene ID: 425008, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SPTSSBprovided by CGNC
    Official Full Name
    serine palmitoyltransferase, small subunit Bprovided by CGNC
    Primary source
    CGNC:52313
    See related
    Ensembl:ENSGALG00010001138
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    C9H3orf57
    Orthologs
    human mouse all
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    Genomic context

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    See SPTSSB in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (21660614..21669326)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (21446112..21454859)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054138 Neighboring gene otolin 1 Neighboring gene NMD3 ribosome export adaptor Neighboring gene serine palmitoyltransferase small subunit B-like Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine C-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of serine C-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of serine palmitoyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine palmitoyltransferase small subunit B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302111.1 → NP_001289040.1  serine palmitoyltransferase small subunit B isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the shorter isoform (1).
      Source sequence(s)
      BX930263, CR353385
      UniProtKB/TrEMBL
      A0A1D5PLF8
      Related
      ENSGALP00010001131.1, ENSGALT00010002581.1
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    2. NM_001302112.1 → NP_001289041.1  serine palmitoyltransferase small subunit B isoform 2

      See identical proteins and their annotated locations for NP_001289041.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an additional exon that contains an in-frame upstream start codon, compared to variant 1, and encodes an isoform (2) with a longer N-terminus, compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
      Source sequence(s)
      BX930263, CR353385
      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    3. NM_001302113.1 → NP_001289042.1  serine palmitoyltransferase small subunit B isoform 2

      See identical proteins and their annotated locations for NP_001289042.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has an additional exon that contains an in-frame upstream start codon, compared to variant 1, and encodes an isoform (2) with a longer N-terminus, compared to isoform 1. Variants 2 and 3 encode the same isoform (2).
      Source sequence(s)
      CR353385
      UniProtKB/TrEMBL
      R4GFF4
      Related
      ENSGALP00010001129.1, ENSGALT00010002579.1
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      21660614..21669326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015291674.4 → XP_015147160.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    2. XM_040705581.2 → XP_040561515.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    3. XM_046898445.1 → XP_046754401.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    4. XM_015291671.4 → XP_015147157.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    5. XM_015291672.4 → XP_015147158.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    6. XM_015291673.4 → XP_015147159.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    7. XM_040705580.2 → XP_040561514.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    8. XM_046898443.1 → XP_046754399.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    9. XM_040705579.2 → XP_040561513.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4
      Conserved Domains (1) summary
      pfam11779
      Location:32 → 85
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    10. XM_046898444.1 → XP_046754400.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      21446112..21454859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046923935.1 → XP_046779891.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    2. XM_046923942.1 → XP_046779898.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    3. XM_046923941.1 → XP_046779897.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    4. XM_046923945.1 → XP_046779901.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    5. XM_046923936.1 → XP_046779892.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    6. XM_046923937.1 → XP_046779893.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    7. XM_046923938.1 → XP_046779894.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    8. XM_046923943.1 → XP_046779899.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like

    9. XM_046923940.1 → XP_046779896.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    10. XM_046923939.1 → XP_046779895.1  serine palmitoyltransferase small subunit B isoform X1

      UniProtKB/TrEMBL
      R4GFF4

    11. XM_046923944.1 → XP_046779900.1  serine palmitoyltransferase small subunit B isoform X2

      UniProtKB/TrEMBL
      A0A1D5PLF8
      Conserved Domains (1) summary
      pfam11779
      Location:7 → 60
      SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
    Nucleotide Protein Strain
    Heading Accession and Version

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