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    PODN podocan [ Gallus gallus (chicken) ]

    Gene ID: 424647, updated on 3-Dec-2024

    Summary

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    Symbol
    PODNprovided by CGNC
    Full Name
    podocanprovided by CGNC
    Primary source
    CGNC:52233
    See related
    Ensembl:ENSGALG00010025069
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PODN in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (24233036..24264740)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (24245281..24277017)

    Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene zyg-11 family member A, cell cycle regulator Neighboring gene cytochrome c oxidase assembly factor 7 (putative) Neighboring gene uncharacterized LOC107054037 Neighboring gene enoyl-CoA hydratase domain containing 2 Neighboring gene sterol carrier protein 2 Neighboring gene carnitine palmitoyltransferase 2 Neighboring gene solute carrier family 1 member 7 Neighboring gene microRNA 6623 Neighboring gene uncharacterized LOC124418131 Neighboring gene CXXC motif containing zinc binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    podocan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      24233036..24264740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046944901.1 → XP_046800857.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    2. XM_046944900.1 → XP_046800856.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    3. XM_046944899.1 → XP_046800855.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6
      Related
      ENSGALP00010037851.1, ENSGALT00010061181.1

    4. XM_046944898.1 → XP_046800854.1  podocan isoform X3

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    5. XM_015291207.4 → XP_015146693.1  podocan isoform X1

      UniProtKB/TrEMBL
      A0A8V1A5Z6
      Conserved Domains (4) summary
      smart00013
      Location:62 → 93
      LRRNT; Leucine rich repeat N-terminal domain
      cd00116
      Location:224 → 509
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:235 → 258
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:233 → 295
      LRR_8; Leucine rich repeat

    6. XM_004936802.5 → XP_004936859.1  podocan isoform X2

      UniProtKB/TrEMBL
      A0A8V1A5Z6
      Conserved Domains (2) summary
      PLN00113
      Location:105 → 546
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:227 → 250
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      24245281..24277017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046923157.1 → XP_046779113.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    2. XM_046923156.1 → XP_046779112.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    3. XM_046923155.1 → XP_046779111.1  podocan isoform X4

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    4. XM_046923154.1 → XP_046779110.1  podocan isoform X3

      UniProtKB/TrEMBL
      A0A8V1A5Z6

    5. XM_040678110.2 → XP_040534044.1  podocan isoform X1

      UniProtKB/TrEMBL
      A0A8V1A5Z6
      Conserved Domains (3) summary
      smart00013
      Location:62 → 93
      LRRNT; Leucine rich repeat N-terminal domain
      PLN00113
      Location:113 → 554
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:235 → 258
      LRR_RI; leucine-rich repeat [structural motif]

    6. XM_040678111.2 → XP_040534045.1  podocan isoform X2

      UniProtKB/TrEMBL
      A0A8V1A5Z6
      Conserved Domains (2) summary
      PLN00113
      Location:105 → 546
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:227 → 250
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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