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    SEC13 SEC13 homolog, nuclear pore and COPII coat complex component [ Gallus gallus (chicken) ]

    Gene ID: 416119, updated on 3-Dec-2024

    Summary

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    Symbol
    SEC13provided by CGNC
    Full Name
    SEC13 homolog, nuclear pore and COPII coat complex componentprovided by CGNC
    Primary source
    CGNC:6381
    See related
    Ensembl:ENSGALG00010022642
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SEC13L1
    Orthologs
    human mouse all
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    Genomic context

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    See SEC13 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (19634968..19642349, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (19673192..19680579, complement)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 2 Neighboring gene uncharacterized LOC121106668 Neighboring gene ghrelin/obestatin prepropeptide Neighboring gene cullin associated and neddylation dissociated 2 (putative) Neighboring gene ribosomal protein L32 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
    2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of TOR signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein exit from endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore outer ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SEC13 homolog
    Names
    SEC13-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277841.2 → NP_001264770.1  protein SEC13 homolog

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000252
      UniProtKB/TrEMBL
      A0A1D5NYF8, A0A8V0ZWR5
      Related
      ENSGALP00010033312.1, ENSGALT00010055088.1
      Conserved Domains (3) summary
      COG2319
      Location:6 → 300
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:61 → 101
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:10 → 288
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      19634968..19642349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293127.4 → XP_015148613.1  protein SEC13 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5NYF8, A0A8V0ZWR5
      Related
      ENSGALP00010033314.1, ENSGALT00010055090.1
      Conserved Domains (3) summary
      COG2319
      Location:6 → 300
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:61 → 101
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:10 → 288
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      19673192..19680579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926473.1 → XP_046782429.1  protein SEC13 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5NYF8, A0A8V0ZWR5
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials