U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TOM1L1 target of myb1 like 1 membrane trafficking protein [ Gallus gallus (chicken) ]

    Gene ID: 417391, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    TOM1L1provided by CGNC
    Full Name
    target of myb1 like 1 membrane trafficking proteinprovided by CGNC
    Primary source
    CGNC:2177
    See related
    Ensembl:ENSGALG00010029234
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TOM1L1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (6446311..6466704)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (6041622..6062016)

    Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 10 Neighboring gene microRNA mir-12232 Neighboring gene uncharacterized LOC107052251 Neighboring gene kinesin family member 2B Neighboring gene uncharacterized LOC121107125 Neighboring gene microRNA 1765 Neighboring gene syntaxin binding protein 4 Neighboring gene COX11, cytochrome c oxidase copper chaperone

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TOM1-like protein 1
    Names
    target of myb1-like 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6446311..6466704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040649714.2 → XP_040505648.1  TOM1-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ABI4, A0A8V1AIW6
      Related
      ENSGALP00010043343.1, ENSGALT00010070652.1
      Conserved Domains (2) summary
      cd16997
      Location:14 → 159
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:206 → 297
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    2. XM_040649715.2 → XP_040505649.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 159
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:205 → 296
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    3. XM_415646.8 → XP_415646.4  TOM1-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AIW6, A0A8V1AMP3
      Related
      ENSGALP00010043344.1, ENSGALT00010070653.1
      Conserved Domains (2) summary
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:197 → 288
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    4. XM_004946156.5 → XP_004946213.2  TOM1-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:196 → 287
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6041622..6062016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040686319.2 → XP_040542253.1  TOM1-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 159
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:206 → 297
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    2. XM_040686320.2 → XP_040542254.1  TOM1-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 159
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:205 → 296
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    3. XM_040686321.2 → XP_040542255.1  TOM1-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:197 → 288
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins

    4. XM_040686322.2 → XP_040542256.1  TOM1-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1AIW6
      Conserved Domains (2) summary
      cd16997
      Location:14 → 150
      VHS_Tom1L1; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 1
      cl03906
      Location:196 → 287
      GAT_SF; GAT domain found in eukaryotic GGAs, metazoan Tom1-like proteins, metazoan STAMs, fungal Vps27, and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials