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    RCAN1 regulator of calcineurin 1 [ Gallus gallus (chicken) ]

    Gene ID: 418510, updated on 3-Dec-2024

    Summary

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    Symbol
    RCAN1provided by CGNC
    Full Name
    regulator of calcineurin 1provided by CGNC
    Primary source
    CGNC:11960
    See related
    Ensembl:ENSGALG00010012879
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RCAN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (106003305..106044083, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (106092459..106133491, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055374 Neighboring gene potassium voltage-gated channel subfamily E regulatory subunit 1 Neighboring gene chloride intracellular channel 6 Neighboring gene uncharacterized LOC121109467 Neighboring gene uncharacterized LOC101748524

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent protein serine/threonine phosphatase regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcipressin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001278079.2 → NP_001265008.1  calcipressin-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000020
      UniProtKB/TrEMBL
      A0A8V0YB10, E1BUP1
      Conserved Domains (1) summary
      pfam04847
      Location:22 → 186
      Calcipressin

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      106003305..106044083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015299390.4 → XP_015154876.2  calcipressin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YP85
      Related
      ENSGALP00010017957.1, ENSGALT00010030918.1
      Conserved Domains (1) summary
      pfam04847
      Location:70 → 234
      Calcipressin

    2. XM_046940305.1 → XP_046796261.1  calcipressin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YB10, E1BUP1
      Related
      ENSGALP00010017953.1, ENSGALT00010030914.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      106092459..106133491 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907893.1 → XP_046763849.1  calcipressin-1 isoform X1

    2. XM_046907894.1 → XP_046763850.1  calcipressin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YB10, E1BUP1
    Nucleotide Protein Strain
    Heading Accession and Version

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