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    JMJD1C jumonji domain containing 1C [ Gallus gallus (chicken) ]

    Gene ID: 423655, updated on 3-Dec-2024

    Summary

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    Symbol
    JMJD1Cprovided by CGNC
    Full Name
    jumonji domain containing 1Cprovided by CGNC
    Primary source
    CGNC:2125
    See related
    Ensembl:ENSGALG00010009410
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See JMJD1C in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (8484256..8648446)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (8363147..8527320)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 15-like Neighboring gene receptor accessory protein 3 Neighboring gene nuclear receptor binding factor 2 Neighboring gene uncharacterized LOC124418074 Neighboring gene uncharacterized LOC101748577 Neighboring gene rhotekin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable JmjC domain-containing histone demethylation protein 2C
    NP_001186475.3
    XP_015143589.2
    XP_015143590.2
    XP_040558292.1
    XP_040558293.1
    XP_040558294.1
    XP_040558295.1
    XP_046776029.1
    XP_046776030.1
    XP_046776031.1
    XP_046776032.1
    XP_046776033.1
    XP_046776034.1
    XP_046776035.1
    XP_046776036.1
    XP_046776037.1
    XP_046776039.1
    XP_046776040.1
    XP_046776041.1
    XP_046798776.1
    XP_046798777.1
    XP_046798778.1
    XP_046798779.1
    XP_046798780.1
    XP_046798781.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199546.3 → NP_001186475.3  probable JmjC domain-containing histone demethylation protein 2C

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000227
      UniProtKB/TrEMBL
      A0A8V0Y632
      Related
      ENSGALP00010012966.1, ENSGALT00010022515.1
      Conserved Domains (2) summary
      PTZ00449
      Location:1053 → 1299
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2268 → 2340
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      8484256..8648446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046942820.1 → XP_046798776.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    2. XM_040702360.2 → XP_040558294.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y632, A0A8V0Y643
      Related
      ENSGALP00010013021.1, ENSGALT00010022585.1
      Conserved Domains (2) summary
      PTZ00449
      Location:847 → 1093
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2062 → 2134
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    3. XM_046942825.1 → XP_046798781.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    4. XM_040702358.2 → XP_040558292.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y3P7, A0A8V0YAH6
      Related
      ENSGALP00010012958.1, ENSGALT00010022495.1
      Conserved Domains (2) summary
      PTZ00449
      Location:954 → 1200
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2169 → 2241
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    5. XM_015288103.4 → XP_015143589.2  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6
      Conserved Domains (2) summary
      PTZ00449
      Location:877 → 1123
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2092 → 2164
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    6. XM_015288104.4 → XP_015143590.2  probable JmjC domain-containing histone demethylation protein 2C isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y3N6
      Conserved Domains (2) summary
      PTZ00449
      Location:840 → 1086
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2055 → 2127
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    7. XM_046942822.1 → XP_046798778.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    8. XM_040702359.2 → XP_040558293.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6
      Conserved Domains (2) summary
      PTZ00449
      Location:877 → 1123
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:2092 → 2164
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    9. XM_046942823.1 → XP_046798779.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    10. XM_046942824.1 → XP_046798780.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    11. XM_046942821.1 → XP_046798777.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6
      Related
      ENSGALP00010012954.1, ENSGALT00010022489.1

    12. XM_040702361.2 → XP_040558295.1  probable JmjC domain-containing histone demethylation protein 2C isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y3N6
      Conserved Domains (2) summary
      PTZ00449
      Location:771 → 1017
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00558
      Location:1986 → 2058
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      8363147..8527320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920078.1 → XP_046776034.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    2. XM_046920077.1 → XP_046776033.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y632

    3. XM_046920073.1 → XP_046776029.1  probable JmjC domain-containing histone demethylation protein 2C isoform X6

      UniProtKB/TrEMBL
      A0A8V0XXI8

    4. XM_046920083.1 → XP_046776039.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    5. XM_046920074.1 → XP_046776030.1  probable JmjC domain-containing histone demethylation protein 2C isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y3P7

    6. XM_046920079.1 → XP_046776035.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    7. XM_046920076.1 → XP_046776032.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    8. XM_046920084.1 → XP_046776040.1  probable JmjC domain-containing histone demethylation protein 2C isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    9. XM_046920075.1 → XP_046776031.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    10. XM_046920081.1 → XP_046776037.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    11. XM_046920080.1 → XP_046776036.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y3N6

    12. XM_046920085.1 → XP_046776041.1  probable JmjC domain-containing histone demethylation protein 2C isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y3N6
    Nucleotide Protein Strain
    Heading Accession and Version

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