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    RPAP1 RNA polymerase II associated protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 423217, updated on 17-Aug-2024

    Summary

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    Symbol
    RPAP1provided by CGNC
    Full Name
    RNA polymerase II associated protein 1provided by CGNC
    Primary source
    CGNC:6547
    See related
    Ensembl:ENSGALG00010020108
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RPAP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (24371994..24411118, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (24339409..24378599, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene RTF1 homolog, Paf1/RNA polymerase II complex component Neighboring gene carbohydrate sulfotransferase 9-like Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase Neighboring gene transmembrane protein 151B-like Neighboring gene AXL receptor tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase II-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      24371994..24411118 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004941626.4 → XP_004941683.2  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZBS1, A0A8V0ZD71

    2. XM_421141.7 → XP_421141.4  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZBS1, A0A8V0ZD71
      Related
      ENSGALP00010028664.1, ENSGALT00010048572.1

    3. XM_015287139.4 → XP_015142625.2  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZBS1, A0A8V0ZD71

    4. XM_004941628.4 → XP_004941685.2  RNA polymerase II-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZD71
      Related
      ENSGALP00010028660.1, ENSGALT00010048569.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      24339409..24378599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671993.2 → XP_040527927.1  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZD71

    2. XM_040671992.2 → XP_040527926.1  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZD71

    3. XM_040671994.2 → XP_040527928.1  RNA polymerase II-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZD71

    4. XM_040671995.2 → XP_040527929.1  RNA polymerase II-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZD71
    Nucleotide Protein Strain
    Heading Accession and Version

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