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    CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 [ Gallus gallus (chicken) ]

    Gene ID: 415736, updated on 18-Sep-2024

    Summary

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    Symbol
    CNEP1R1provided by CGNC
    Full Name
    CTD nuclear envelope phosphatase 1 regulatory subunit 1provided by CGNC
    Primary source
    CGNC:14490
    See related
    Ensembl:ENSGALG00010024101
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TMEM188
    Orthologs
    human mouse all
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    Genomic context

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    See CNEP1R1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (6296943..6302825, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (6639331..6645223, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054280 Neighboring gene poly(A) RNA polymerase D5, non-canonical Neighboring gene HEAT repeat containing 3 Neighboring gene zinc finger protein 423 Neighboring gene uncharacterized LOC107054281 Neighboring gene cerebellin 1 precursor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
    2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of Nem1-Spo7 phosphatase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear envelope phosphatase-regulatory subunit 1
    Names
    transmembrane protein 188

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198857.3 → NP_001185786.1  nuclear envelope phosphatase-regulatory subunit 1

      See identical proteins and their annotated locations for NP_001185786.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000248
      UniProtKB/TrEMBL
      A0A1D5PB80, A0A8V0ZVT8
      Related
      ENSGALP00010035726.1, ENSGALT00010058758.1
      Conserved Domains (1) summary
      pfam09771
      Location:5 → 122
      Tmemb_18A; Transmembrane protein 188

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6296943..6302825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040707056.2 → XP_040562990.1  nuclear envelope phosphatase-regulatory subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZVU7
      Related
      ENSGALP00010035741.1, ENSGALT00010058775.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6639331..6645223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925481.1 → XP_046781437.1  nuclear envelope phosphatase-regulatory subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZVU7
    Nucleotide Protein Strain
    Heading Accession and Version

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