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    CHD9 chromodomain helicase DNA binding protein 9 [ Gallus gallus (chicken) ]

    Gene ID: 415722, updated on 17-Aug-2024

    Summary

    Symbol
    CHD9provided by CGNC
    Full Name
    chromodomain helicase DNA binding protein 9provided by CGNC
    Primary source
    CGNC:2719
    See related
    Ensembl:ENSGALG00010021789
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
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    Genomic context

    See CHD9 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    43
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 11 NC_052542.1 (4658675..4741247, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 11 NC_052583.1 (5000727..5083298, complement)

    Chromosome 11 - NC_052542.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111688 Neighboring gene AKT interacting protein Neighboring gene RB transcriptional corepressor like 2 Neighboring gene TOX high mobility group box family member 3 Neighboring gene uncharacterized LOC121111692 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112533269

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    chromodomain-helicase-DNA-binding protein 9
    XP_015147862.2
    XP_015147863.2
    XP_015147864.2
    XP_015147867.2
    XP_015147868.2
    XP_015147869.2
    XP_015147870.2
    XP_015147871.2
    XP_025010148.2
    XP_025010149.2
    XP_040536980.1
    XP_040536981.1
    XP_040536982.1
    XP_040536983.1
    XP_040536984.1
    XP_040536985.1
    XP_040536986.1
    XP_040536987.1
    XP_040536988.1
    XP_040536989.1
    XP_046755498.1
    XP_046755499.1
    XP_046755500.1
    XP_046755501.1
    XP_046755502.1
    XP_046755503.1
    XP_046755504.1
    XP_046781691.1
    XP_046781692.1
    XP_046781693.1
    XP_046781694.1
    XP_046781695.1
    XP_046781696.1
    XP_046781697.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052542.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4658675..4741247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046899548.1XP_046755504.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    2. XM_015292384.4XP_015147870.2  chromodomain-helicase-DNA-binding protein 9 isoform X5

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25382582
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    3. XM_015292381.4XP_015147867.2  chromodomain-helicase-DNA-binding protein 9 isoform X2

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25542598
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    4. XM_025154380.3XP_025010148.2  chromodomain-helicase-DNA-binding protein 9 isoform X6

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25302574
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    5. XM_015292383.4XP_015147869.2  chromodomain-helicase-DNA-binding protein 9 isoform X4

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25392583
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    6. XM_015292382.4XP_015147868.2  chromodomain-helicase-DNA-binding protein 9 isoform X3

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25462590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    7. XM_015292376.4XP_015147862.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Related
      ENSGALP00010031909.1, ENSGALT00010053003.1
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    8. XM_046899543.1XP_046755499.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    9. XM_046899545.1XP_046755501.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    10. XM_046899546.1XP_046755502.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    11. XM_015292378.4XP_015147864.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    12. XM_046899544.1XP_046755500.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    13. XM_046899542.1XP_046755498.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    14. XM_015292377.4XP_015147863.2  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    15. XM_046899547.1XP_046755503.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    16. XM_025154381.3XP_025010149.2  chromodomain-helicase-DNA-binding protein 9 isoform X8

      Conserved Domains (6) summary
      PTZ00121
      Location:25283
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:20702114
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:387913
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:298356
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:214278
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:388609
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    17. XM_015292385.4XP_015147871.2  chromodomain-helicase-DNA-binding protein 9 isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZF29
      Related
      ENSGALP00010031899.1, ENSGALT00010052993.1
      Conserved Domains (6) summary
      PTZ00121
      Location:25283
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:20862130
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:387913
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:298356
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:214278
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:388609
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052583.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5000727..5083298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046925741.1XP_046781697.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    2. XM_040681052.2XP_040536986.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25382582
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    3. XM_040681049.2XP_040536983.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25542598
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    4. XM_040681053.2XP_040536987.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25302574
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    5. XM_040681051.2XP_040536985.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25392583
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    6. XM_040681050.2XP_040536984.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25462590
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    7. XM_040681046.2XP_040536980.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    8. XM_046925736.1XP_046781692.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    9. XM_046925738.1XP_046781694.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    10. XM_046925739.1XP_046781695.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    11. XM_040681047.2XP_040536981.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    12. XM_046925737.1XP_046781693.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    13. XM_046925735.1XP_046781691.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    14. XM_040681048.2XP_040536982.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
      Conserved Domains (5) summary
      PTZ00121
      Location:494752
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:25552599
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:8561477
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:767825
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:683747
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    15. XM_046925740.1XP_046781696.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZM70
    16. XM_040681055.2XP_040536989.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

      Conserved Domains (6) summary
      PTZ00121
      Location:25283
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:20702114
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:387913
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:298356
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:214278
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:388609
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    17. XM_040681054.2XP_040536988.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZF29
      Conserved Domains (6) summary
      PTZ00121
      Location:25283
      PTZ00121; MAEBL; Provisional
      smart00592
      Location:20862130
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:387913
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:298356
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:214278
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cl28899
      Location:388609
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily