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    SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 [ Gallus gallus (chicken) ]

    Gene ID: 771344, updated on 17-Aug-2024

    Summary

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    Symbol
    SNRPGP15provided by CGNC
    Full Name
    small nuclear ribonucleoprotein polypeptide G pseudogene 15provided by CGNC
    Primary source
    CGNC:10382
    See related
    Ensembl:ENSGALG00010018546
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SNRPG
    Orthologs
    human mouse all
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    Genomic context

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    See SNRPGP15 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 22 NC_052553.1 (3432719..3435751, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 22 NC_052594.1 (3472174..3475182, complement)

    Chromosome 22 - NC_052553.1Genomic Context describing neighboring genes Neighboring gene TIA1 cytotoxic granule associated RNA binding protein Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene prenylcysteine oxidase 1 Neighboring gene family with sequence similarity 136 member A Neighboring gene transforming growth factor alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SMN-Sm protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U5 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small nuclear ribonucleoprotein G
    NP_001289021.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001302092.2 → NP_001289021.1  small nuclear ribonucleoprotein G

      See identical proteins and their annotated locations for NP_001289021.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000335
      UniProtKB/TrEMBL
      E1C8V9
      Related
      ENSGALP00010026785.1, ENSGALT00010044863.1
      Conserved Domains (1) summary
      cd01719
      Location:5 → 74
      Sm_G; Sm protein G

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052553.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3432719..3435751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003071583.3 RNA Sequence

    2. XR_003071584.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052594.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3472174..3475182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_006936900.1 RNA Sequence

    2. XR_006936899.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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