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    TSPAN12 tetraspanin 12 [ Gallus gallus (chicken) ]

    Gene ID: 417763, updated on 3-Dec-2024

    Summary

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    Symbol
    TSPAN12provided by CGNC
    Full Name
    tetraspanin 12provided by CGNC
    Primary source
    CGNC:6864
    See related
    Ensembl:ENSGALG00010001232
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TSPAN16; tetraspanin-12
    Orthologs
    human mouse all
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    Genomic context

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    See TSPAN12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (23630806..23676052)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (23889678..23934996)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene cadherin-like and PC-esterase domain containing 1 Neighboring gene microRNA 1645 Neighboring gene inhibitor of growth family member 3 Neighboring gene potassium voltage-gated channel subfamily D member 2 Neighboring gene uncharacterized LOC100859665

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-12
    Names
    tetraspanin 16
    tspan-12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007849.2 → NP_001007850.1  tetraspanin-12 isoform a

      See identical proteins and their annotated locations for NP_001007850.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZIF5
      UniProtKB/TrEMBL
      A0A8V0X1Q0
      Related
      ENSGALP00010001405.1, ENSGALT00010002855.1
      Conserved Domains (2) summary
      cd03157
      Location:116 → 218
      TM4SF12_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:10 → 244
      Tetraspannin; Tetraspanin family

    2. NM_001397016.1 → NP_001383945.1  tetraspanin-12 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/Swiss-Prot
      Q5ZIF5
      UniProtKB/TrEMBL
      A0A8V0X1Q0
      Related
      ENSGALP00010001404.1, ENSGALT00010002854.1
      Conserved Domains (2) summary
      cd03157
      Location:116 → 218
      TM4SF12_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:10 → 244
      Tetraspannin; Tetraspanin family

    3. NM_001397017.1 → NP_001383946.1  tetraspanin-12 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      23630806..23676052
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046936697.1 → XP_046792653.1  tetraspanin-12 isoform X2

      UniProtKB/TrEMBL
      A0A8V0X1Q0, A0A8V0XA61
      Related
      ENSGALP00010001401.1, ENSGALT00010002851.1

    2. XM_046936632.1 → XP_046792588.1  tetraspanin-12 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X1Q0, A0A8V0X4Q4
      Related
      ENSGALP00010001402.1, ENSGALT00010002852.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      23889678..23934996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907155.1 → XP_046763111.1  tetraspanin-12 isoform X2

      UniProtKB/TrEMBL
      A0A8V0X1Q0, A0A8V0XA61

    2. XM_046907154.1 → XP_046763110.1  tetraspanin-12 isoform X1

      UniProtKB/TrEMBL
      A0A8V0X1Q0, A0A8V0X4Q4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZIF5.1 GenPept UniProtKB/Swiss-Prot:Q5ZIF5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.