U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PRPF40A PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [ Gallus gallus (chicken) ]

    Gene ID: 373972, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PRPF40Aprovided by CGNC
    Official Full Name
    PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)provided by CGNC
    Primary source
    CGNC:48984
    See related
    Ensembl:ENSGALG00010010386
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    FNBP3
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PRPF40A in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (35162323..35180964, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (35081548..35100208, complement)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111348 Neighboring gene formin like 2 Neighboring gene uncharacterized LOC107053905 Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA cis splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pre-mRNA-processing factor 40 homolog A
    Names
    formin binding protein 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      35162323..35180964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015290222.4 → XP_015145708.1  pre-mRNA-processing factor 40 homolog A isoform X12

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 149
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    2. XM_015290223.4 → XP_015145709.1  pre-mRNA-processing factor 40 homolog A isoform X8

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    3. XM_040704430.2 → XP_040560364.1  pre-mRNA-processing factor 40 homolog A isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y929, Q90YB6
      Related
      ENSGALP00010014099.1, ENSGALT00010024855.1
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    4. XM_040704432.2 → XP_040560366.1  pre-mRNA-processing factor 40 homolog A isoform X11

      UniProtKB/TrEMBL
      A0A8V0Y6W7, Q90WG3
      Related
      ENSGALP00010014113.1, ENSGALT00010024873.1
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 149
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    5. XM_040704431.2 → XP_040560365.1  pre-mRNA-processing factor 40 homolog A isoform X7

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    6. XM_015290216.4 → XP_015145702.1  pre-mRNA-processing factor 40 homolog A isoform X3

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    7. XM_025152721.3 → XP_025008489.1  pre-mRNA-processing factor 40 homolog A isoform X10

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    8. XM_015290219.4 → XP_015145705.1  pre-mRNA-processing factor 40 homolog A isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y589, Q90YB6
      Related
      ENSGALP00010014110.1, ENSGALT00010024868.1
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    9. XM_015290215.4 → XP_015145701.1  pre-mRNA-processing factor 40 homolog A isoform X2

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    10. XM_015290221.4 → XP_015145707.1  pre-mRNA-processing factor 40 homolog A isoform X9

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    11. XM_015290217.4 → XP_015145703.1  pre-mRNA-processing factor 40 homolog A isoform X5

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    12. XM_015290214.4 → XP_015145700.1  pre-mRNA-processing factor 40 homolog A isoform X1

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      35081548..35100208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040677155.2 → XP_040533089.1  pre-mRNA-processing factor 40 homolog A isoform X12

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 149
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    2. XM_040677151.2 → XP_040533085.1  pre-mRNA-processing factor 40 homolog A isoform X8

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    3. XM_040677147.2 → XP_040533081.1  pre-mRNA-processing factor 40 homolog A isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y929, Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:793 → 847
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 730
      PRP40; Splicing factor [RNA processing and modification]

    4. XM_040677154.2 → XP_040533088.1  pre-mRNA-processing factor 40 homolog A isoform X11

      UniProtKB/TrEMBL
      A0A8V0Y6W7, Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 149
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    5. XM_040677150.2 → XP_040533084.1  pre-mRNA-processing factor 40 homolog A isoform X7

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    6. XM_040677146.2 → XP_040533080.1  pre-mRNA-processing factor 40 homolog A isoform X3

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:797 → 851
      FF; Contains two conserved F residues
      PHA03247
      Location:15 → 214
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:240 → 734
      PRP40; Splicing factor [RNA processing and modification]

    7. XM_040677153.2 → XP_040533087.1  pre-mRNA-processing factor 40 homolog A isoform X10

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    8. XM_040677149.2 → XP_040533083.1  pre-mRNA-processing factor 40 homolog A isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y589, Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    9. XM_040677145.2 → XP_040533079.1  pre-mRNA-processing factor 40 homolog A isoform X2

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:801 → 855
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 738
      PRP40; Splicing factor [RNA processing and modification]

    10. XM_040677152.2 → XP_040533086.1  pre-mRNA-processing factor 40 homolog A isoform X9

      UniProtKB/TrEMBL
      Q90WG3
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    11. XM_040677148.2 → XP_040533082.1  pre-mRNA-processing factor 40 homolog A isoform X5

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    12. XM_040677144.2 → XP_040533078.1  pre-mRNA-processing factor 40 homolog A isoform X1

      UniProtKB/TrEMBL
      Q90YB6
      Conserved Domains (3) summary
      smart00441
      Location:805 → 859
      FF; Contains two conserved F residues
      PHA03247
      Location:14 → 248
      PHA03247; large tegument protein UL36; Provisional
      COG5104
      Location:248 → 742
      PRP40; Splicing factor [RNA processing and modification]

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_204161.1: Suppressed sequence

      Description
      NM_204161.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from mouse, laboratory: Prpf40a (GeneID:56194).
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials