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    RBM27 RNA binding motif protein 27 [ Gallus gallus (chicken) ]

    Gene ID: 416348, updated on 17-Aug-2024

    Summary

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    Symbol
    RBM27provided by CGNC
    Full Name
    RNA binding motif protein 27provided by CGNC
    Primary source
    CGNC:5673
    See related
    Ensembl:ENSGALG00010016455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RBM27 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (17428036..17451122)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (17439002..17462089)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing ring finger 2 Neighboring gene leucyl-tRNA synthetase Neighboring gene POU class 4 homeobox 3 Neighboring gene transcription elongation regulator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      17428036..17451122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004945045.5 → XP_004945102.1  RNA-binding protein 27 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YXX2, F1NM59
      Related
      ENSGALP00010022914.1, ENSGALT00010039655.1
      Conserved Domains (5) summary
      COG0419
      Location:726 → 852
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015294057.4 → XP_015149543.1  RNA-binding protein 27 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YXX2, F1NM59
      Related
      ENSGALP00010022918.1, ENSGALT00010039659.1
      Conserved Domains (5) summary
      COG0419
      Location:726 → 852
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_025154882.3 → XP_025010650.1  RNA-binding protein 27 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YVX6, A0A8V0YXX2
      Related
      ENSGALP00010022903.1, ENSGALT00010039644.1
      Conserved Domains (5) summary
      COG0419
      Location:683 → 809
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_015294058.4 → XP_015149544.1  RNA-binding protein 27 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YWB9, A0A8V0YXX2
      Related
      ENSGALP00010022910.1, ENSGALT00010039651.1
      Conserved Domains (5) summary
      COG0419
      Location:676 → 802
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:479 → 554
      RRM_SF; RNA recognition motif (RRM) superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      17439002..17462089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682536.2 → XP_040538470.1  RNA-binding protein 27 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YXX2, F1NM59
      Conserved Domains (5) summary
      COG0419
      Location:726 → 852
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_040682537.2 → XP_040538471.1  RNA-binding protein 27 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YXX2, F1NM59
      Conserved Domains (5) summary
      COG0419
      Location:726 → 852
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_040682538.2 → XP_040538472.1  RNA-binding protein 27 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YVX6, A0A8V0YXX2
      Conserved Domains (5) summary
      COG0419
      Location:683 → 809
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:529 → 604
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_040682539.2 → XP_040538473.1  RNA-binding protein 27 isoform X3

      UniProtKB/TrEMBL
      A0A8V0YWB9, A0A8V0YXX2
      Conserved Domains (5) summary
      COG0419
      Location:676 → 802
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      TIGR01622
      Location:113 → 173
      SF-CC1; splicing factor, CC1-like family
      pfam00642
      Location:281 → 303
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
      cl02562
      Location:7 → 72
      PWI; PWI domain
      cl17169
      Location:479 → 554
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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