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    SCYL2 SCY1 like pseudokinase 2 [ Gallus gallus (chicken) ]

    Gene ID: 417930, updated on 3-Dec-2024

    Summary

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    Symbol
    SCYL2provided by CGNC
    Full Name
    SCY1 like pseudokinase 2provided by CGNC
    Primary source
    CGNC:8793
    See related
    Ensembl:ENSGALG00010011529
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SCYL2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (47298552..47333498)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (47595588..47630532)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene UHRF1 binding protein 1 like Neighboring gene ARP6 actin-related protein 6 homolog Neighboring gene solute carrier family 17 member 8 Neighboring gene nuclear receptor subfamily 1 group H member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SCY1-like protein 2
    Names
    SCY1-like 2
    SCY1-like, kinase-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030751.1 → NP_001025922.1  SCY1-like protein 2

      See identical proteins and their annotated locations for NP_001025922.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ851521
      UniProtKB/TrEMBL
      A0A8V0YDP3, Q5F3X9
      Related
      ENSGALP00010015800.1, ENSGALT00010027588.1
      Conserved Domains (2) summary
      cd14011
      Location:1 → 156
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:200 → 230
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      47298552..47333498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015284733.4 → XP_015140219.1  SCY1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDP7, A0A8V0YID6
      Related
      ENSGALP00010015802.1, ENSGALT00010027590.1
      Conserved Domains (2) summary
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]

    2. XM_015284735.4 → XP_015140221.1  SCY1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YDP7
      Related
      ENSGALP00010015804.1, ENSGALT00010027593.1
      Conserved Domains (3) summary
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      pfam00069
      Location:32 → 327
      Pkinase; Protein kinase domain
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]

    3. XM_040696082.2 → XP_040552016.1  SCY1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDP7, A0A8V0YID6
      Conserved Domains (2) summary
      cd14011
      Location:38 → 329
      PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
      sd00044
      Location:373 → 403
      HEAT; HEAT repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      47595588..47630532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907374.1 → XP_046763330.1  SCY1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDP7, A0A8V0YID6

    2. XM_046907376.1 → XP_046763332.1  SCY1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YDP7

    3. XM_046907375.1 → XP_046763331.1  SCY1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDP7, A0A8V0YID6
    Nucleotide Protein Strain
    Heading Accession and Version

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