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    ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [ Gallus gallus (chicken) ]

    Gene ID: 419108, updated on 3-Dec-2024

    Summary

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    Symbol
    ATP5C1provided by CGNC
    Full Name
    ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1provided by CGNC
    Primary source
    CGNC:5096
    See related
    Ensembl:ENSGALG00010005283
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ATP5F1C
    Orthologs
    human mouse all
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    Genomic context

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    See ATP5C1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (4865363..4872155)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (4982869..4989653)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene inter-alpha-trypsin inhibitor heavy chain 2 Neighboring gene uncharacterized LOC121107878 Neighboring gene Kin17 DNA and RNA binding protein Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC121107879 Neighboring gene uncharacterized LOC107054553 Neighboring gene GATA binding protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase subunit gamma, mitochondrial
    Names
    ATP synthase F1 subunit gamma
    NP_001265025.1
    NP_001265026.1
    XP_015149252.1
    XP_046764421.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001278096.2 → NP_001265025.1  ATP synthase subunit gamma, mitochondrial isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      JAENSK010000011
      UniProtKB/TrEMBL
      A0A1L1RYK0, A0A8V0XSQ1
      Related
      ENSGALP00010007095.1, ENSGALT00010012531.1
      Conserved Domains (1) summary
      TIGR01146
      Location:22 → 293
      ATPsyn_F1gamma; ATP synthase, F1 gamma subunit

    2. NM_001278097.1 → NP_001265026.1  ATP synthase subunit gamma, mitochondrial isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) is 1 aa shorter at the C-terminus compared to isoform 1.
      Source sequence(s)
      BU132888, BX950663, CR353583
      UniProtKB/TrEMBL
      A0A1D5P0U8, A0A8V0XSQ1
      Related
      ENSGALP00010007091.1, ENSGALT00010012527.1
      Conserved Domains (1) summary
      TIGR01146
      Location:22 → 293
      ATPsyn_F1gamma; ATP synthase, F1 gamma subunit

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4865363..4872155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293766.4 → XP_015149252.1  ATP synthase subunit gamma, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSQ1
      Conserved Domains (1) summary
      cl00365
      Location:1 → 250
      F1-ATPase_gamma; mitochondrial ATP synthase gamma subunit

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4982869..4989653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908465.1 → XP_046764421.1  ATP synthase subunit gamma, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSQ1
    Nucleotide Protein Strain
    Heading Accession and Version

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