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    SEC23A Sec23 homolog A, coat complex II component [ Gallus gallus (chicken) ]

    Gene ID: 423335, updated on 3-Dec-2024

    Summary

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    Symbol
    SEC23Aprovided by CGNC
    Full Name
    Sec23 homolog A, coat complex II componentprovided by CGNC
    Primary source
    CGNC:7715
    See related
    Ensembl:ENSGALG00010006343
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See SEC23A in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (37070243..37097598, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (37040473..37067794, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor 1 Neighboring gene C-type lectin domain containing 14A Neighboring gene uncharacterized LOC107053516 Neighboring gene trafficking protein particle complex 6A Neighboring gene gem nuclear organelle associated protein 2 Neighboring gene pinin, desmosome associated protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in COPII-coated vesicle budding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in COPII-coated vesicle cargo loading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPII vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum exit site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein transport protein Sec23A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      37070243..37097598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040701977.2 → XP_040557911.1  protein transport protein Sec23A

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8
      Related
      ENSGALP00010008895.1, ENSGALT00010015134.1
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    2. XM_421250.8 → XP_421250.1  protein transport protein Sec23A

      See identical proteins and their annotated locations for XP_421250.1

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      37040473..37067794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672690.2 → XP_040528624.1  protein transport protein Sec23A

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    2. XM_040672691.2 → XP_040528625.1  protein transport protein Sec23A

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8
      Conserved Domains (1) summary
      PLN00162
      Location:12 → 763
      PLN00162; transport protein sec23; Provisional

    3. XM_046919106.1 → XP_046775062.1  protein transport protein Sec23A

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8

    4. XM_046919105.1 → XP_046775061.1  protein transport protein Sec23A

      UniProtKB/TrEMBL
      A0A1D5P0E2, A0A8V0XSE8
    Nucleotide Protein
    Heading Accession and Version

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