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    U2SURP U2 snRNP associated SURP domain containing [ Gallus gallus (chicken) ]

    Gene ID: 424773, updated on 17-Aug-2024

    Summary

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    Symbol
    U2SURPprovided by CGNC
    Full Name
    U2 snRNP associated SURP domain containingprovided by CGNC
    Primary source
    CGNC:52256
    See related
    Ensembl:ENSGALG00010015839
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See U2SURP in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (10283851..10326479)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (10085148..10127768)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene caskin-1-like Neighboring gene microRNA 1458 Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene solute carrier family 9 member A9 Neighboring gene uncharacterized LOC112532976

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U2 snRNP-associated SURP motif-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10283851..10326479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_422593.8 → XP_422593.5  U2 snRNP-associated SURP motif-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0YTU7
      Related
      ENSGALP00010022019.1, ENSGALT00010038153.1
      Conserved Domains (5) summary
      smart00582
      Location:498 → 633
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:113 → 309
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:386 → 437
      Surp; Surp module
      cd12223
      Location:230 → 313
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:794 → 842
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    2. XM_004937071.5 → XP_004937128.2  U2 snRNP-associated SURP motif-containing protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0YTU7
      Related
      ENSGALP00010022026.1, ENSGALT00010038162.1
      Conserved Domains (5) summary
      smart00582
      Location:497 → 632
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:113 → 308
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:385 → 436
      Surp; Surp module
      cd12223
      Location:229 → 312
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:793 → 841
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    3. XM_046898659.1 → XP_046754615.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10085148..10127768
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040679379.2 → XP_040535313.1  U2 snRNP-associated SURP motif-containing protein isoform X1

      UniProtKB/TrEMBL
      A0A8V0YTU7
      Conserved Domains (5) summary
      smart00582
      Location:498 → 633
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:113 → 309
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:386 → 437
      Surp; Surp module
      cd12223
      Location:230 → 313
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:794 → 842
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    2. XM_040679380.2 → XP_040535314.1  U2 snRNP-associated SURP motif-containing protein isoform X2

      UniProtKB/TrEMBL
      A0A8V0YTU7
      Conserved Domains (5) summary
      smart00582
      Location:497 → 632
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:113 → 308
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam01805
      Location:385 → 436
      Surp; Surp module
      cd12223
      Location:229 → 312
      RRM_SR140; RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
      cd21370
      Location:793 → 841
      cwf21_SR140; cwf21 domain found in U2-associated protein SR140 and similar proteins

    3. XM_046924175.1 → XP_046780131.1  U2 snRNP-associated SURP motif-containing protein isoform X3

    Nucleotide Protein
    Heading Accession and Version

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