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    PRPH2 peripherin 2 [ Gallus gallus (chicken) ]

    Gene ID: 395899, updated on 26-Nov-2024

    Summary

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    Official Symbol
    PRPH2provided by CGNC
    Official Full Name
    peripherin 2provided by CGNC
    Primary source
    CGNC:49540
    See related
    Ensembl:ENSGALG00010018541
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RDS; CRDS1; peripherin-2
    Orthologs
    human mouse all
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    Genomic context

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    See PRPH2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (22733398..22742909, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (22642033..22651554, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene transcriptional regulating factor 1 Neighboring gene uncharacterized LOC124417881 Neighboring gene ubiquitin protein ligase E3 component n-recognin 2 Neighboring gene GLTSCR1 like Neighboring gene tubulin folding cofactor C Neighboring gene protein kinase domain containing, cytoplasmic A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peripherin-2 and Rom-1 have opposing effects on rod outer segment targeting of retinitis pigmentosa-linked peripherin-2 mutants. Böhm S, et al. Sci Rep, 2017 May 24. PMID 28539581, Free PMC Article
    2. Identification of two rds/peripherin homologs in the chick retina. Weng J, et al. Invest Ophthalmol Vis Sci, 1998 Feb. PMID 9478005
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peripherin-2
    Names
    chicken retinal degeneration slow 1
    photoreceptor outer segment membrane glycoprotein 1
    retinal degeneration slow protein
    retinal degeneration, slow

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205038.1 → NP_990369.1  peripherin-2

      See identical proteins and their annotated locations for NP_990369.1

      Status: PROVISIONAL

      Source sequence(s)
      AF031238
      UniProtKB/Swiss-Prot
      O42281
      Related
      ENSGALP00010026775.1, ENSGALT00010044853.1
      Conserved Domains (2) summary
      cd03162
      Location:120 → 262
      peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:20 → 281
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      22733398..22742909 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      22642033..22651554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O42281.1 GenPept UniProtKB/Swiss-Prot:O42281

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials