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    LRRTM4 leucine rich repeat transmembrane neuronal 4 [ Gallus gallus (chicken) ]

    Gene ID: 419539, updated on 17-Aug-2024

    Summary

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    Symbol
    LRRTM4provided by CGNC
    Full Name
    leucine rich repeat transmembrane neuronal 4provided by CGNC
    Primary source
    CGNC:292
    See related
    Ensembl:ENSGALG00010020736
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LRRTM4 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 22 NC_052553.1 (3695677..3895740, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 22 NC_052594.1 (3732092..3932088, complement)

    Chromosome 22 - NC_052553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054988 Neighboring gene uncharacterized LOC121107425 Neighboring gene uncharacterized LOC121107426 Neighboring gene uncharacterized LOC121107427 Neighboring gene adrenoceptor alpha 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing. Parveen A, et al. BMC Genet, 2020 May 20. PMID 32434464, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing.
      Title: Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat transmembrane neuronal protein 4
    Names
    leucine-rich repeat transmembrane neuronal 4 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052553.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3695677..3895740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040651595.2 → XP_040507529.1  leucine-rich repeat transmembrane neuronal protein 4

      UniProtKB/TrEMBL
      A0A8V0ZFS9, F1NP47
      Related
      ENSGALP00010029615.1, ENSGALT00010050119.1
      Conserved Domains (3) summary
      sd00033
      Location:64 → 86
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:86 → 145
      LRR_8; Leucine rich repeat
      cd21340
      Location:120 → 311
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052594.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3732092..3932088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040689531.2 → XP_040545465.1  leucine-rich repeat transmembrane neuronal protein 4

      UniProtKB/TrEMBL
      A0A8V0ZFS9, F1NP47
      Conserved Domains (3) summary
      sd00033
      Location:64 → 86
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:86 → 145
      LRR_8; Leucine rich repeat
      cd21340
      Location:120 → 311
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials