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    EIF5 eukaryotic translation initiation factor 5 [ Gallus gallus (chicken) ]

    Gene ID: 423479, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EIF5provided by CGNC
    Official Full Name
    eukaryotic translation initiation factor 5provided by CGNC
    Primary source
    CGNC:8711
    See related
    Ensembl:ENSGALG00010015759
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See EIF5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (49724270..49731755)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (49702861..49710338)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene TNF alpha induced protein 2 Neighboring gene exocyst complex component 3 like Neighboring gene uncharacterized LOC121110863 Neighboring gene small nucleolar RNA SNORA28 Neighboring gene microtubule affinity regulating kinase 3 Neighboring gene uncharacterized LOC107053557 Neighboring gene creatine kinase B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GDP-dissociation inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables eukaryotic initiation factor eIF2 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formation of cytoplasmic translation initiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in formation of translation preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006488.2 → NP_001006488.1  eukaryotic translation initiation factor 5

      See identical proteins and their annotated locations for NP_001006488.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000215
      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0
      Related
      ENSGALP00010021894.1, ENSGALT00010037941.1
      Conserved Domains (2) summary
      cd11561
      Location:231 → 381
      W2_eIF5; C-terminal W2 domain of eukaryotic translation initiation factor 5
      pfam01873
      Location:9 → 128
      eIF-5_eIF-2B; Domain found in IF2B/IF5

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      49724270..49731755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046941837.1 → XP_046797793.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    2. XM_015287479.4 → XP_015142965.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0
      Conserved Domains (2) summary
      cd11561
      Location:231 → 381
      W2_eIF5; C-terminal W2 domain of eukaryotic translation initiation factor 5
      pfam01873
      Location:9 → 128
      eIF-5_eIF-2B; Domain found in IF2B/IF5

    3. XM_046941836.1 → XP_046797792.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      49702861..49710338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918708.1 → XP_046774664.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    2. XM_046918704.1 → XP_046774660.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    3. XM_046918705.1 → XP_046774661.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    4. XM_046918706.1 → XP_046774662.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0

    5. XM_046918707.1 → XP_046774663.1  eukaryotic translation initiation factor 5 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RNG6, Q5ZIE0
    Nucleotide Protein Strain
    Heading Accession and Version

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