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    OPN5L2 opsin 5-like 2 [ Gallus gallus (chicken) ]

    Gene ID: 422050, updated on 3-Dec-2024

    Summary

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    Symbol
    OPN5L2provided by CGNC
    Full Name
    opsin 5-like 2provided by CGNC
    Primary source
    CGNC:51604
    See related
    Ensembl:ENSGALG00010008109
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    COPN5L2
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    Genomic context

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    See OPN5L2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (108621381..108625629, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (108384316..108388564, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene centromere protein Q Neighboring gene methylmalonyl-CoA mutase Neighboring gene uncharacterized LOC121110151 Neighboring gene uncharacterized LOC121110153 Neighboring gene zinc finger protein 91-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A non-mammalian type opsin 5 functions dually in the photoreceptive and non-photoreceptive organs of birds. Ohuchi H, et al. PLoS One, 2012. PMID 22348098, Free PMC Article
    2. Expression patterns of the opsin 5-related genes in the developing chicken retina. Tomonari S, et al. Dev Dyn, 2008 Jul. PMID 18570255
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    opsin 5-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162892.3 → NP_001156364.2  opsin 5-like 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000070
      UniProtKB/TrEMBL
      A0A8V0XRP9, B3XZF6, F1NB72
      Related
      ENSGALP00010010884.1, ENSGALT00010019336.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      108621381..108625629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      108384316..108388564 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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