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    ATP10B ATPase phospholipid transporting 10B (putative) [ Gallus gallus (chicken) ]

    Gene ID: 416159, updated on 17-Aug-2024

    Summary

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    Symbol
    ATP10Bprovided by CGNC
    Full Name
    ATPase phospholipid transporting 10B (putative)provided by CGNC
    Primary source
    CGNC:1162
    See related
    Ensembl:ENSGALG00010010035
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ATP10B in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (7220321..7374303)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (7114254..7378644)

    Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106731 Neighboring gene uncharacterized LOC101751673 Neighboring gene uncharacterized LOC101751941 Neighboring gene uncharacterized LOC121106732 Neighboring gene microRNA 146a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable phospholipid-transporting ATPase VB; phospholipid-transporting ATPase VB
    Names
    ATPase, class V, type 10B
    XP_004944865.1
    XP_025010679.2
    XP_040538549.1
    XP_040538551.1
    XP_040538553.1
    XP_046783118.1
    XP_046783119.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7220321..7374303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025154911.3 → XP_025010679.2  phospholipid-transporting ATPase VB isoform X2

      UniProtKB/TrEMBL
      A0A8V0YCH7
      Related
      ENSGALP00010013646.1, ENSGALT00010023871.1
      Conserved Domains (1) summary
      cd02073
      Location:66 → 1195
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    2. XM_004944808.5 → XP_004944865.1  phospholipid-transporting ATPase VB isoform X1

      UniProtKB/TrEMBL
      E1BX05
      Related
      ENSGALP00010013643.1, ENSGALT00010023859.1
      Conserved Domains (5) summary
      TIGR01652
      Location:77 → 1312
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
      pfam13246
      Location:720 → 797
      Cation_ATPase; Cation transport ATPase (P-type)
      pfam16209
      Location:71 → 126
      PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
      pfam16212
      Location:1076 → 1318
      PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
      cl21460
      Location:1045 → 1093
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      7114254..7378644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927162.1 → XP_046783118.1  phospholipid-transporting ATPase VB isoform X2

    2. XM_040682617.2 → XP_040538551.1  phospholipid-transporting ATPase VB isoform X2

      Conserved Domains (1) summary
      cd02073
      Location:66 → 1195
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    3. XM_040682619.2 → XP_040538553.1  phospholipid-transporting ATPase VB isoform X2

      Conserved Domains (1) summary
      cd02073
      Location:66 → 1195
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

    4. XM_046927163.1 → XP_046783119.1  phospholipid-transporting ATPase VB isoform X2

    5. XM_040682615.2 → XP_040538549.1  phospholipid-transporting ATPase VB isoform X1

      Conserved Domains (1) summary
      cd02073
      Location:79 → 1208
      P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
    Nucleotide Protein
    Heading Accession and Version

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