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    RHBDF1 rhomboid 5 homolog 1 [ Gallus gallus (chicken) ]

    Gene ID: 416647, updated on 3-Dec-2024

    Summary

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    Symbol
    RHBDF1provided by CGNC
    Full Name
    rhomboid 5 homolog 1provided by CGNC
    Primary source
    CGNC:5609
    See related
    Ensembl:ENSGALG00010019213
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RHBDF1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (11995762..12065182, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (11991251..12060665, complement)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein U11/U12 subunit 25 Neighboring gene RNA polymerase III subunit K Neighboring gene N-methylpurine DNA glycosylase Neighboring gene nitrogen permease regulator-like 3 (S. cerevisiae) Neighboring gene hemoglobin subunit zeta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of epidermal growth factor receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    inactive rhomboid protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11995762..12065182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046900703.1 → XP_046756659.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    2. XM_015294608.4 → XP_015150094.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:680 → 821
      Rhomboid; Rhomboid family
      pfam12595
      Location:125 → 342
      Rhomboid_SP; Rhomboid serine protease

    3. XM_046900704.1 → XP_046756660.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    4. XM_040647478.2 → XP_040503412.1  inactive rhomboid protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2TSP2, A0A8V0Z341
      Related
      ENSGALP00010027658.1, ENSGALT00010046459.1
      Conserved Domains (2) summary
      pfam01694
      Location:645 → 786
      Rhomboid; Rhomboid family
      pfam12595
      Location:90 → 307
      Rhomboid_SP; Rhomboid serine protease

    5. XM_046900702.1 → XP_046756658.1  inactive rhomboid protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z341

    6. XM_046900701.1 → XP_046756657.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    7. XM_046900705.1 → XP_046756661.1  inactive rhomboid protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2TSP2, A0A8V0Z341
      Related
      ENSGALP00010027648.1, ENSGALT00010046439.1

    8. XM_040647479.2 → XP_040503413.1  inactive rhomboid protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:679 → 820
      Rhomboid; Rhomboid family
      pfam12595
      Location:124 → 341
      Rhomboid_SP; Rhomboid serine protease

    9. XM_004945356.5 → XP_004945413.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341
      Related
      ENSGALP00010027654.1, ENSGALT00010046451.1
      Conserved Domains (2) summary
      pfam01694
      Location:680 → 821
      Rhomboid; Rhomboid family
      pfam12595
      Location:125 → 342
      Rhomboid_SP; Rhomboid serine protease

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      11991251..12060665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927685.1 → XP_046783641.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    2. XM_040683190.2 → XP_040539124.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:680 → 821
      Rhomboid; Rhomboid family
      pfam12595
      Location:125 → 342
      Rhomboid_SP; Rhomboid serine protease

    3. XM_046927686.1 → XP_046783642.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    4. XM_040683186.2 → XP_040539120.1  inactive rhomboid protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2TSP2, A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:645 → 786
      Rhomboid; Rhomboid family
      pfam12595
      Location:90 → 307
      Rhomboid_SP; Rhomboid serine protease

    5. XM_046927684.1 → XP_046783640.1  inactive rhomboid protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z341

    6. XM_046927683.1 → XP_046783639.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341

    7. XM_046927687.1 → XP_046783643.1  inactive rhomboid protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q2TSP2, A0A8V0Z341

    8. XM_040683191.2 → XP_040539125.1  inactive rhomboid protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:679 → 820
      Rhomboid; Rhomboid family
      pfam12595
      Location:124 → 341
      Rhomboid_SP; Rhomboid serine protease

    9. XM_040683187.2 → XP_040539121.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:680 → 821
      Rhomboid; Rhomboid family
      pfam12595
      Location:125 → 342
      Rhomboid_SP; Rhomboid serine protease

    10. XM_040683189.2 → XP_040539123.1  inactive rhomboid protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q3AKI9, A0A8V0Z341
      Conserved Domains (2) summary
      pfam01694
      Location:680 → 821
      Rhomboid; Rhomboid family
      pfam12595
      Location:125 → 342
      Rhomboid_SP; Rhomboid serine protease
    Nucleotide Protein
    Heading Accession and Version

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