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    ITGA9 integrin subunit alpha 9 [ Gallus gallus (chicken) ]

    Gene ID: 420757, updated on 3-Dec-2024

    Summary

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    Symbol
    ITGA9provided by CGNC
    Full Name
    integrin subunit alpha 9provided by CGNC
    Primary source
    CGNC:9296
    See related
    Ensembl:ENSGALG00010017647
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ITGA9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (48626620..48849460, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (48672603..48894993, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene neuronal differentiation 6 Neighboring gene uncharacterized LOC121109979 Neighboring gene golgin A4 Neighboring gene LRR binding FLII interacting protein 2 Neighboring gene immunoglobulin lambda variable 5-37-like Neighboring gene TCR gamma alternate reading frame protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of integrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    integrin alpha-9
    Names
    integrin, alpha 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012858.2 → NP_001012876.2  integrin alpha-9 precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000037
      UniProtKB/TrEMBL
      A0A1D5PQP8, Q5ZM22
      Related
      ENSGALP00010025149.1, ENSGALT00010042659.1
      Conserved Domains (1) summary
      smart00191
      Location:355 → 408
      Int_alpha; Integrin alpha (beta-propellor repeats)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      48626620..48849460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040683149.2 → XP_040539083.1  integrin alpha-9 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9K1
      Related
      ENSGALP00010025135.1, ENSGALT00010042645.1
      Conserved Domains (1) summary
      smart00191
      Location:260 → 313
      Int_alpha; Integrin alpha (beta-propellor repeats)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      48672603..48894993 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046911338.1 → XP_046767294.1  integrin alpha-9 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z9K1
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials