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    RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 [ Gallus gallus (chicken) ]

    Gene ID: 422701, updated on 3-Dec-2024

    Summary

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    Symbol
    RAP1GDS1provided by CGNC
    Full Name
    Rap1 GTPase-GDP dissociation stimulator 1provided by CGNC
    Primary source
    CGNC:9282
    See related
    Ensembl:ENSGALG00010004421
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RAP1GDS1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (59207797..59296975)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (59209014..59298179)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417935 Neighboring gene uncharacterized LOC107053277 Neighboring gene uncharacterized LOC107053275 Neighboring gene tetraspanin 17 Neighboring gene uncharacterized LOC101748470 Neighboring gene uncharacterized LOC112532320

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rap1 GTPase-GDP dissociation stimulator 1
    Names
    RAP1, GTP-GDP dissociation stimulator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031150.3 → NP_001026321.2  rap1 GTPase-GDP dissociation stimulator 1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000074
      UniProtKB/TrEMBL
      Q5ZL86
      Related
      ENSGALP00010006040.1, ENSGALT00010010335.1
      Conserved Domains (3) summary
      smart00185
      Location:78 → 118
      ARM; Armadillo/beta-catenin-like repeats
      COG5064
      Location:40 → 142
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:91 → 116
      ARM; armadillo repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      59207797..59296975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046940155.1 → XP_046796111.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X1

      UniProtKB/TrEMBL
      Q5ZL86

    2. XM_046940156.1 → XP_046796112.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X2

      UniProtKB/TrEMBL
      Q5ZL86

    3. XM_046940157.1 → XP_046796113.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XH62, Q5ZL86
      Related
      ENSGALP00010006045.1, ENSGALT00010010340.1

    4. XM_046940158.1 → XP_046796114.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XH57, A0A8V0XJU2
      Related
      ENSGALP00010006043.1, ENSGALT00010010338.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      59209014..59298179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916201.1 → XP_046772157.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X1

      UniProtKB/TrEMBL
      Q5ZL86

    2. XM_046916202.1 → XP_046772158.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X2

      UniProtKB/TrEMBL
      Q5ZL86

    3. XM_046916203.1 → XP_046772159.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XH62, Q5ZL86

    4. XM_046916204.1 → XP_046772160.1  rap1 GTPase-GDP dissociation stimulator 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XH57, A0A8V0XJU2
    Nucleotide Protein Strain
    Heading Accession and Version

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