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    TMEM39B transmembrane protein 39B [ Gallus gallus (chicken) ]

    Gene ID: 419650, updated on 17-Aug-2024

    Summary

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    Symbol
    TMEM39Bprovided by CGNC
    Full Name
    transmembrane protein 39Bprovided by CGNC
    Primary source
    CGNC:51049
    See related
    Ensembl:ENSGALG00010017347
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TMEM39B in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (5462219..5473504)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (5225634..5236893)

    Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor B2 Neighboring gene protein tyrosine phosphatase 4A2 Neighboring gene microRNA 1780 Neighboring gene KH RNA binding domain containing, signal transduction associated 1 Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene MARCKS like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane protein 39B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006313.3 → NP_001006313.2  transmembrane protein 39B

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000339
      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3
      Conserved Domains (1) summary
      pfam10271
      Location:47 → 477
      Tmp39; Putative transmembrane protein

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5462219..5473504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025142994.3 → XP_024998762.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3
      Conserved Domains (1) summary
      pfam10271
      Location:47 → 477
      Tmp39; Putative transmembrane protein

    2. XM_015297666.4 → XP_015153152.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3
      Conserved Domains (1) summary
      pfam10271
      Location:47 → 477
      Tmp39; Putative transmembrane protein

    3. XM_015297665.4 → XP_015153151.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3
      Related
      ENSGALP00010024465.1, ENSGALT00010041834.1
      Conserved Domains (1) summary
      pfam10271
      Location:47 → 477
      Tmp39; Putative transmembrane protein

    4. XM_040651714.1 → XP_040507648.1  transmembrane protein 39B isoform X2

      Conserved Domains (1) summary
      pfam10271
      Location:15 → 349
      Tmp39; Putative transmembrane protein

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5225634..5236893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046931973.1 → XP_046787929.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3

    2. XM_046931974.1 → XP_046787930.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3

    3. XM_046931972.1 → XP_046787928.1  transmembrane protein 39B isoform X1

      UniProtKB/TrEMBL
      A0A1L1S149, E1C8M3

    4. XM_046931975.1 → XP_046787931.1  transmembrane protein 39B isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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