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    RBM12B RNA binding motif protein 12B [ Gallus gallus (chicken) ]

    Gene ID: 420223, updated on 17-Aug-2024

    Summary

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    Symbol
    RBM12Bprovided by CGNC
    Full Name
    RNA binding motif protein 12Bprovided by CGNC
    Primary source
    CGNC:51213
    See related
    Ensembl:ENSGALG00010012116
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RBM12B in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (125438565..125445074, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (125622262..125628774, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110014 Neighboring gene uncharacterized LOC124417702 Neighboring gene family with sequence similarity 92 member A Neighboring gene transmembrane protein 67 Neighboring gene pyruvate dehyrogenase phosphatase catalytic subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 12B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030944.2 → NP_001026115.1  RNA-binding protein 12B

      See identical proteins and their annotated locations for NP_001026115.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000044
      UniProtKB/TrEMBL
      F1NVJ4, Q5ZHZ9
      Related
      ENSGALP00010016814.1, ENSGALT00010029055.1
      Conserved Domains (5) summary
      cd12513
      Location:307 → 387
      RRM3_RBM12B; RNA recognition motif 3 in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12744
      Location:2 → 80
      RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12746
      Location:175 → 252
      RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12748
      Location:423 → 498
      RRM4_RBM12B; RNA recognition motif 4 in RNA-binding protein 12B (RBM12B) and similar proteins
      cd12750
      Location:622 → 698
      RRM5_RBM12B; RNA recognition motif 5 in RNA-binding protein 12B (RBM12B) and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      125438565..125445074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      125622262..125628774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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